Sequence
atgc intronic sequence ATGC exonic sequenceTTCATCTATGATTTACCTGCAAGACTGCAAAAATGTATCAAGTCAGAAGCCTATGGCGATGCTGTCAGGTTCTATACTGGAGCAATGCCAATTCTCAAGgtttacatctgtcctcggataacttttccatttttttgtagtattcttttcatgttactggggcatttaacattctgaagatatatatgtggagatatgtttaaaaatatgaatttctctttctgttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G02030.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G023858_T03 (Zea mays), 5'ss of exon 5
TTCATCTATGATTTACCTGCAAGACTGCAAAAATGTATCAAGTCAGAAGCCTATGGCGATGCTGTCAGGTTCTATACTGGAGCAATGCCAATTCTCAAGgtttacatctgtcctcggat-aacttttccatttttttgtagtattcttttcatgttactggggcatt-taacattctgaagatatatat--gtggagatatgtttaaaaatatgaatttctctttctgttcag
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TTCATATATGACCTTCCAACTCGTCTTAACAAATGCATCAAGACAGAAGCATATGCAGATGCTGTCAGGTTTTTTACTGGAGCAAAACCTATTTTTGAGgta---atttgagcttaagtgaaattcttcatctta--gaaacaccct------gcaacatggttatcacggtgccctggcgacatgagtcgcctctggtgcgcctggaca-----------------------
upper sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G01660.1 (Glycine max), 5'ss of exon 5
TTCATCTATGATTTACCTGCAAGACTGCAAAAATGTATCAAGTCAGAAGCCTATGGCGATGCTGTCAGGTTCTATACTGGAGCAATGCCAATTCTCAAGgtttacatctgtcctcggataacttttccatttttttgtagtattcttttcatgttactggggcatttaacattctgaagatatatatgtggagatatgtttaaaaatatgaatttctctttctgt-tcag
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TTCATATATGACCTACCCGATAGACTAAGCAAGTGCATCAAGTCGGAGGCCTATGCAGATGCAGTCAGGTTTTACATTGGAGCAATGCCAATTTTTAAGgttg-----------tggttggcttatatggtttctgattcaatcccttg---attacttttaaacacaacgtatt-aatccaggtcttagatgaattatct-------tgttttcctccctctttatcag
upper sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G01610.1 (Glycine max), 5'ss of exon 5
TTCATCTATGATTTACCTGCAAGACTGCAAAAATGTATCAAGTCAGAAGCCTATGGCGATGCTGTCAGGTTCTATACTGGAGCAATGCCAATTCTCAAGgtttacatctgtcctcggataacttttccatttttttgtagtattcttttcatgttactggggcatttaacattctgaagatatatatgtggagatatgtttaaaaatatgaatttctctttctgttcag
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TTCATATATGATCTCCCCGATAGACTAGGCAAGTGCATCAAGTCGGAGGCCTATGCAGATGCAGTCAGGTTTTACATTGGAGCAATGCCAATTTTTAAGgttg-----------tggttggcttatatggtttctgattccatcccttg---attacttttaaacacaacatact-aatccaggtctcagatgaaatatct-----tgttttcccctctctttactag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164110248|gb|EL992504.1|EL992504EST: CCTATGGCGGTGCTGTCAGGTTCTATACTGGAGCAATGCCAATTCTCAAG GTATATGGCGATACATCA
genomic: CCTATGGCGATGCTGTCAGGTTCTATACTGGAGCAATGCCAATTCTCAAGgtttacatct ... ttctgttcagGTATATGGCGATACATCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCATCTATGATTTACCTGCAAGACTGCAAAAATGTATCAAGTCAGAAGCCTATGGCGATGCTGTCAGGTTCTATACTGGAGCAATGCCAATTCTCAAGgtttacatctgtcctcggataacttttccatttttttgtagtattcttttcatgttactggggcatttaacattctgaagatatatatgtggagatatgtttaaaaatatgaatttctctttctgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA