Sequence
atgc intronic sequence ATGC exonic sequenceTGATGTTTATAGTTACGGTGTGGTCCTTCTCGAATTGTTAACTGGTAGAAAACCTGTGGATATGTCACAACCTTCAGGCCAAGAAAATCTCGTCACTTGGgtaagtagaaagttcttgtcatctcctagatcttcctgcactttcattgtcgaaaacttaagcttttgaagtctcgaatgtaaaaatttgattctggatgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G02010.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G02010.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os01g14932.1 (Oryza sativa), 5'ss of exon 7
TGATGTTTATAGTTACGGTGTGGTCCTTCTCGAATTGTTAACTGGTAGAAAACCTGTGGATATGTCACAACCTTCAGGCCAAGAAAATCTCGTCACTTGGgtaagtagaaagttcttgtcatctcct-agatcttcctgcactttcattgtcgaaaacttaagcttttgaagtctcgaatgtaaaaatt-tgattctggatgcag-
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CGATGTATATAGCTATGGAGTTGTTCTACTTGAACTACTTACTGGGAGGAGGCCTGTGGATATGTCACAACCTTCTGGCCAGGAAAATCTAGTGACATGGgttag-atttctttctgctcttatcttcagctgttattgtattaccttttt---atatctgaacat--ggatcctttagtatgataattgtcatctgaagttcact
upper sequence: AT4G02010.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G40500.1 (Glycine max), 5'ss of exon 7
TGATGTTTATAGTTACGGTGTGGTCCTTCTCGAATTGTTAACTGGTAGAAAACCTGTGGATATGTCACAACCTTCAGGCCAAGAAAATCTCGTCACTTGGgtaagtagaaagttcttgtcatctcctagatcttcctgcactttca-----ttgtcgaaaacttaa-gcttttgaagtctcgaatgtaaaaatttgattctggatgcag-------------------------------------------------------------------
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TGATGTTTATAGCTATGGTGTTGTCTTGCTGGAACTGCTTACTGGTAGGAAGCCTGTGGATATGTCACAGCCAACTGGACAAGAGAACCTTGTTACTTGGgttagttccataccttgttagtcacatgttacttatgtcaaattcagagcatcttcccatgtttgctatatttatactaggaaatgtcgaggatttaatttaattcaaatccatcctttgaaacttttaaacttttacattaagtaggtagttaataagttcatttttcctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116407017|gb|EG449609.1|EG449609EST: AACCTGTGGATATGTCACAACCTTCAGGCCAAGAAAATCTCGTCACTTGG ACAAGGTCAGTTTTAAGAGACAAAGACCGATTAGAAGAACTAGTCGATTCA
genomic: AACCTGTGGATATGTCACAACCTTCAGGCCAAGAAAATCTCGTCACTTGGgtaagtagaa ... ctggatgcagACAAGGCCAGTTTTAAGAGACAAAGACCGGTTAGAAGAACTAGTCGATTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGTTTATAGTTACGGTGTGGTCCTTCTCGAATTGTTAACTGGTAGAAAACCTGTGGATATGTCACAACCTTCAGGCCAAGAAAATCTCGTCACTTGGgtaagtagaaagttcttgtcatctcctagatcttcctgcactttcattgtcgaaaacttaagcttttgaagtctcgaatgtaaaaatttgattctggatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA