1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCTAGCTTGTTGTGGATTCCGTTGTGGTGATGGTTGTGACGGTGGCTATCCAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatcattgtctcactaggaacactcaaaatttggttatggttttaaattagagcattttggtgatgtttttattggtctattag
species | Arabidopsis thaliana |
transcript | AT4G01610.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAAEST: gi|116481390|gb|EG523982.1|EG523982
genomic: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAA
EST: GCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGEST: gi|125269021|gb|EL283106.1|EL283106
genomic: GCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: GGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGEST: gi|125247356|gb|EL261441.1|EL261441
genomic: GGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGAEST: gi|124959506|gb|EL034210.1|EL034210
genomic: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGA
EST: TAGCGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGEST: gi|301501566|gb|HO207106.1|HO207106
genomic: TAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGEST: gi|124887245|gb|EH966147.1|EH966147
genomic: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: CGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGEST: gi|125274167|gb|EL288252.1|EL288252
genomic: CGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: TGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGEST: gi|164005614|gb|ES000292.1|ES000292
genomic: TGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGEST: gi|125326102|gb|EL340182.1|EL340182
genomic: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTG
EST: TTCGTATAGCGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGEST: gi|125312919|gb|EL327004.1|EL327004
genomic: TTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTG
EST: TTTTCGTATAGCGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGEST: gi|164180592|gb|ES010126.1|ES010126
genomic: TTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: CAATTGCTGCTTGGCAATAC-TTTCGTATAGCGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAAEST: gi|164182910|gb|ES174454.1|ES174454
genomic: CAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAA
EST: TTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGEST: gi|124819951|gb|EH904817.1|EH904817
genomic: TTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: CAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCGEST: gi|164091381|gb|ES206533.1|ES206533
genomic: CAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGATGCTCTCACCCGGGTTGCGAACCG
EST: AATTGTCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAG TGTGATCCATACTTTGATAATACCGGA
genomic: AATTG-CTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatca ... ggtctattagTGTGATCCATACTTTGATAATACCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTAGCTTGTTGTGGATTCCGTTGTGGTGATGGTTGTGACGGTGGCTATCCAATTGCTGCTTGGCAATACTTTTCGTATAGCGGTGTTGTCACAGAAGAGgtaaagatcattgtctcactaggaacactcaaaatttggttatggttttaaattagagcattttggtgatgtttttattggtctattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT