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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATTTCTTGAGGAGCAGTCTTTTCCAGAAATTTTGATGAAGGCCATGTCCTTGGGGAAACCTATAGTTGCACCAGACCTCTTCAACATTAGAAAATATgtatgctccttcttcccttgcatgtggcttgacggaaatgtgttgttgcatgttctctgtccatttgactttcactgactgtatttgcaatattaaatag

Basic information

species Arabidopsis thaliana
transcript AT4G01210.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01210.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA07G06780.1 (Glycine max), 5'ss of exon 7
ATCATTTCTTGAGGAGCAGTCTTTTCCAGAAATTTTGATGAAGGCCATGTCCTTGGGGAAACCTATAGTTGCACCAGACCTCTTCAACATTAGAAAATATgtatgct--ccttcttcccttgcatgtggcttgacggaaatgtgttgttgcatgttctctgtccatt-tgactttcactgac--tgtatttgcaatattaaatag
||| |||||||| || |||||||||||||| |||||||| || ||||||||||| | |||||| ||  ||||||| ||  |   ||  || |||||||||||||| |  |  |||    ||   | |   ||     ||   | |||| |  | |    ||    |  | ||||| |   |   ||  |||| | | |       
ATCCTTTCTTGAAGAACAGTCTTTTCCAGAGATTTTGATCAAAGCCATGTCCTTTGAGAAACCAATTATTGCACCTGATGTTCCCATGATCAGAAAATATgtatgtttgcactctagtttttttttttttttactttaaccttattgtgg-gtctatattgcttgtggttacttttatcaatcttgagtttgaattctcct----

upper sequence: AT4G01210.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G03340.1 (Glycine max), 5'ss of exon 7
ATCATTTCTTGAGGAGCAGTCTTTTCCAGAAATTTTGATGAAGGCCATGTCCTTGGGGAAACCTATAGTTGCACCAGACCTCTTCAACATTAGAAAATATgtatgctccttcttcccttgcatgtggcttgacggaaatgtgttgttgcat-gttctctgtccatttgactttcactgactgtatttgcaatattaaatag
||| |||||||| || |||||||||||||| |||||||| || || |||||||| | |||||| ||  |||| || ||  |   ||  || |||||||||||||| |    ||    ||   | |   || ||       ||    |  || | |   |||   |||         ||| | |   | ||     | |   
ATCCTTTCTTGAAGAACAGTCTTTTCCAGAGATTTTGATCAAAGCTATGTCCTTTGAGAAACCAATTATTGCTCCTGATGTTCCCATGATCAGAAAATATgtatgttagcactctaatttttttttctttaaccatgtcttgggtctatattgcttcttgttacttttgtcaatcttgaatatgaat-catctccagactt