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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAATTACTCCAGAGAGTGTAATATACAGCTTTGGCACTCTTCTGCTTGATCTTCTCAGCGGAAAACATATACCTCCTAGCCATgtaagtattttagccataataagtttgttttccatacgagattgcagcttttacttgaaaaggtgaaggttgattctttcaatctgttttatacag

Basic information

species Arabidopsis thaliana
transcript AT4G00710.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 7
GGAGAATTACTCCAGAGAGTGTAATATACAGCTTTGGCACTCTTCTGCTTGATCTTCTCAGCGGAAAACATATACCTCCTAGCCATgtaagt-attttagccataataagtttgttttccatacgagattgcagcttttacttgaaaaggtgaa------ggttgattctttcaatctgttttatacag
||||| | || ||||| ||||||||||| || |||||||||||||||||||| |||||||| || || ||||| || || || ||||||||| ||| |   |||           | |   | |  | |  |    |  || ||| | | |||       |||| ||   |||| | ||  |  ||   
GGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCATgtaagtcattcttatcatccggtaaagaatatgggtgcaggttaacttggtcaacctgacaggttgattcagatggtttatgagttcagtttgggtccta---

upper sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 7
GGAGAATTACTCCAGAGAGTGTAATATACAGCTTTGGCACTCTTCTGCTTGATCTTCTCAGCGGAAAACATATACCTCCTAGCCATgtaagt-attttagccataataagtttgttttccatacgagattgcagcttttacttgaaaaggtgaa--ggttgattct--ttcaatctgttttatacag
||||| | || ||||| ||||||||||| |||||||| || ||| ||||||| |||||||| || || ||||| || || || ||||||||| ||| |   ||||   |     | |    | | || |  |    |  || ||| | | |||   || || ||    || | | ||  |  || | 
GGAGAGTGACACCAGAAAGTGTAATATATAGCTTTGGAACCCTTTTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCATgtaagtcattcttatcataggtaaagaatatga-gtgctagttaacttggtcaacctgacaggttgatttggatggtttgagtttagtttgggtcctaaaa

upper sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 7
GGAGAATTACTCCAGAGAGTGTAATATACAGCTTTGGCACTCTTCTGCTTGATCTTCTCAGCGGAAAACATATACCTCCTAGCCATgtaagtattttagccataataagtttgttttccatacgagattgcagcttttacttgaaaaggtgaaggttgattc---tttcaatct-gttttatacag
| ||| | || ||||| ||||||||||| ||||| ||||||||| ||||||| || ||||| ||||| ||||| ||||| ||||||||||||| ||    | |    |||    ||   ||     ||      | |    || |   |    | |||| |    ||  ||||  | | ||   ||
GAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCATgtaagtacttgtttcttgcctagtggcattcttatgaagcatactttatctgttctgcagtcggattgcttgagttggattggaatcaaggtgtagttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831461|gb|CK121145.1|CK121145
EST:     GCACTCTTCTGCTTGATCTTCTCAGCGGAAAACATATACCTCCTAGCCAT                         GCCCTTGATCTGATTAGAGACAGAAATCTCCAGACGCTAACTGATTCTTGC
genomic: GCACTCTTCTGCTTGATCTTCTCAGCGGAAAACATATACCTCCTAGCCATgtaagtattt ... ttttatacagGCCCTTGATCTGATTAGAGACAGAAATCTCCAGACGCTAACTGATTCTTGC
EST: gi|47831462|gb|CK121146.1|CK121146
EST:     GCACTCTTCTGCTTGATCTTCTCAGCGGAAAACATATACCTCCTAGCCAT                         GCCCTTGATCTGATTAGAGACAGAAATCTCCAGACGCTAACTGATTCTTGC
genomic: GCACTCTTCTGCTTGATCTTCTCAGCGGAAAACATATACCTCCTAGCCATgtaagtattt ... ttttatacagGCCCTTGATCTGATTAGAGACAGAAATCTCCAGACGCTAACTGATTCTTGC