Sequence
atgc intronic sequence ATGC exonic sequenceCCGTCGCATATATGAAGAATATCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGTGGACTTTACACTACAAGTGTAGAGgtatgtaatctttttgttctgagacttaaccttttttcttgtgggtttactctctgtgaagttgaactttgattttatag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G62120.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G62120.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G38340.1 (Glycine max), 5'ss of exon 8
CCGTCGCATATATGAAGAATATCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGTGGACTTTACACTACAAGTGTAGAGgtatgtaatc----tttttgttctgagacttaaccttttttcttgtgg-gtttactctctgtgaagtt--gaactttgatttta-tag
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TAGGCGTATATACGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACTAGTGTTGAGgtatatgtttgaaattattgcataaacactgttatgctattttaatggtgtaagctgcttataaaattttgatgttcaattttgctag
upper sequence: AT3G62120.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G40930.4 (Glycine max), 5'ss of exon 8
CCGTCGCATATATGAAGAATATCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGTGGACTTTACACTACAAGTGTAGAGgtatgtaatc--tttttgttctgagacttaaccttttttcttgtgggtttactctctgtgaagtt--gaactttgatttta-tag
| || ||||| ||||| ||| | |||||||| || | || |||| ||| ||||| ||||||||||||||||||||| |||||||| ||||| ||||||| | || ||| | | || | |||| || | || || | | || || || || ||||| |||
TAGGCGTATATACGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtctgattcttgcataaacagttgtgttattttaatg-gtgtaagctgcttataaaattttgatgttcaattttgctag
upper sequence: AT3G62120.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 8
CCGTCGCATATATGAAGAATATCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGTGGACTTTACACTACAAGTGTAGAGgtatgtaatctttttgttctgagacttaaccttttttcttgtgggtttactctctgtgaagttgaactttgattttatag---------------------------------------------------------------
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TAGACGTATATATGAAGAGTACTTGGCGATTCCTGTTATAAAGGGTAAGAAGAGTGAGATGGAGAAGTTTGCTGGTGGATTTTACACAACAAGTGTTGAGgtacttgat--ttttatttatctgcttgcactccatcctt---tgtccatcatccaatgaattgcaaaccgtttgcattaactattctgtgttctatgatagaagtaaactgtgtaattatgtctgtgtttaccttttttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124829355|gb|EH913946.1|EH913946EST: AGAGTGAAAATGAGAAGTTTGCTGGTGGACTTTACACTACAAGTGTAGAG GCTTTCATTCCAAACACTGGTCGTGGTGTACAAGGT
genomic: AGAGTGAAAATGAGAAGTTTGCTGGTGGACTTTACACTACAAGTGTAGAGgtatgtaatc ... gattttatagGCTTTCATTCCAAACACTGGTCGTGGTGTACAAGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCGTCGCATATATGAAGAATATCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGTGGACTTTACACTACAAGTGTAGAGgtatgtaatctttttgttctgagacttaaccttttttcttgtgggtttactctctgtgaagttgaactttgattttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA