1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGGCCTATTTCTATACGTGCTTTCGGCAACATGAGACTCATACCTACCCCGATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattctctataaatttatttatttcttttgatctaaatactattatttaggttgtttttttcttttttag
species | Arabidopsis thaliana |
transcript | AT3G60940.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GACCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAG GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAAEST: gi|116427111|gb|EG469703.1|EG469703
genomic: GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
EST: GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAG GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAAEST: gi|116427108|gb|EG469700.1|EG469700
genomic: GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
EST: GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAG GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAAEST: gi|116427118|gb|EG469710.1|EG469710
genomic: GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
EST: CTCACTTCCACTGGTATCGATCTATACCACGTTCCAG GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAAEST: gi|116427119|gb|EG469711.1|EG469711
genomic: CTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
EST: GACCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAG GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAAEST: gi|116427110|gb|EG469702.1|EG469702
genomic: GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
EST: CTCACTTCCACTGGTATCGATCTATACCACGTTCCAG GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAAEST: gi|116427112|gb|EG469704.1|EG469704
genomic: CTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
EST: GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAG GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
genomic: GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCCTATTTCTATACGTGCTTTCGGCAACATGAGACTCATACCTACCCCGATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattctctataaatttatttatttcttttgatctaaatactattatttaggttgtttttttcttttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG