1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAGgttagccacgttctgttccaaatcttaatctcaatatctactcttttcttcattgtataactaagataacgtgaataacaagaaaacttttgtttttgggtttaatag
species | Arabidopsis thaliana |
transcript | AT3G58780.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGAAGAGGGAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAG ATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGTEST: gi|163984586|gb|ES195713.1|ES195713
genomic: AGAAGAGGGAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAGgttagccacg ... ggtttaatagATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGT
EST: AAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAG ATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGTGTGATAEST: gi|164077774|gb|ES153578.1|ES153578
genomic: AAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAGgttagccacg ... ggtttaatagATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGTGTGATA
EST: GGAGTTGCAACACAATAACATGTACCTGCGAGCAAAG ATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGTGTGATAEST: gi|164021652|gb|ES170976.1|ES170976
genomic: GGAGTTGCAACACAATAACATGTACCTGCGAGCAAAGgttagccacg ... ggtttaatagATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGTGTGATA
EST: GAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAG ATAGCCGAAGGCGCCAGATTGAATCCGGACCAGC
genomic: GAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAGgttagccacg ... ggtttaatagATAGCCGAAGGCGCCAGATTGAATCCGGACCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAGgttagccacgttctgttccaaatcttaatctcaatatctactcttttcttcattgtataactaagataacgtgaataacaagaaaacttttgtttttgggtttaatag
- - - - - - - - - - - - - - - - - - GCAAAG