1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAGgtaaaacacttaatgtccatgtctcgtagactaatgaactctagttgaagacttatctgtattgtatgtttaacgatggcaaacaaaattttgttctgcag
species | Arabidopsis thaliana |
transcript | AT3G58140.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGAGTGAAATTCAAGCCATATTCAAAG TATCCTCCTTGTTACAAGGACATCAGTTTCTGGATAAGTGATTTGTTEST: gi|124732314|gb|EH823716.1|EH823716
genomic: GGAGTGAAATTCAAGCCATATTCAAAGgtaaaacact ... tgttctgcagTATCCTCCTTGTTACAAGGACATCAGTTTCTGGATAAGTGATTTGTT
EST: CCCAGTTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAG TATCCTCCTTGTTACAAGGACATCAGTTTCTGGATAAGTGATTTGTTCACAEST: gi|116411244|gb|EG453836.1|EG453836
genomic: CCCAGTTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAGgtaaaacact ... tgttctgcagTATCCTCCTTGTTACAAGGACATCAGTTTCTGGATAAGTGATTTGTTCACA
EST: TTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAG TATCCTCCTTGTTACAAGGACATCAGTTTCTGGATAAGTGATTTGTTCACA
genomic: TTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAGgtaaaacact ... tgttctgcagTATCCTCCTTGTTACAAGGACATCAGTTTCTGGATAAGTGATTTGTTCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAGgtaaaacacttaatgtccatgtctcgtagactaatgaactctagttgaagacttatctgtattgtatgtttaacgatggcaaacaaaattttgttctgcag
- - - AAGGAG
- - - - AGGAGA
- - - - GGAGAA
- - - - - - - - TTGGAG