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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCCTCCAATGCGTGATGCTCTAAACGCAACTGGCCGCTCAATCTTCTATTCACTATGTGAATGgtacacaactacacgtccaaaatgtcttcacacaggacgagttaatttgaaacccacagcattcttccaagttattaatttgtattttgctactttctgtag

Basic information

species Arabidopsis thaliana
transcript AT3G56310.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125159041|gb|EL187347.1|EL187347
EST:     CTCTAAACGCAACTGGCCGCTCAATCTTCTATTCACTATGTGAATG                         GGGCGTTGATGATCCTGCCTTGTGGGACAAAAGAAGTTGGAAACAGTTGGC
genomic: CTCTAAACGCAACTGGCCGCTCAATCTTCTATTCACTATGTGAATGgtacacaact ... ctttctgtagGGGCGTTGATGATCCTGCCTTGTGGG-CAAAAGAAGTTGGAAACAGTTGGC
EST: gi|164009510|gb|ES198626.1|ES198626
EST:     GCTCTAAACGCAACTGGCCGCTCAATCTTCTATTCACTATGTGAATG                         GGGCGTTGATGATCCTGCCTTGTGGGCAAAAGAAGTTGGAAACAGTTGGCG
genomic: GCTCTAAACGCAACTGGCCGCTCAATCTTCTATTCACTATGTGAATGgtacacaact ... ctttctgtagGGGCGTTGATGATCCTGCCTTGTGGGCAAAAGAAGTTGGAAACAGTTGGCG