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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTATTTCTTCCTACGGGAGGTTGAATTTGGAAACGATGGGGACTATTCAGAAGACCGATTTATAAAAATCGTCAATGCACATCTCGCCAACACTATAGgtttcttactctacgaaaactaaatcttaagtagttgttcagccttttggttatttggtacagaacttgtttctgaaaaatgtttatcaatgcatttctcttcag

Basic information

species Arabidopsis thaliana
transcript AT3G55400.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55400.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 8
AGGTATTTCTTCCTACGGGAGGTTGAATTTGGAAACGATGGGGACTATTCAGAAGACCGATTTATAAAAATCGTCAATGCACATCTCGCCAACACTATAGgt-ttcttactctacgaaaactaaatcttaagtagttgttcagccttttggttatttggtacagaacttgtt--tctgaaaaatgtttatcaatgcatttctct-tcag-------------------------------
||||| |||||| | ||||| || |||||||| || || |||||||||||||| || || ||||| || || |||||||| ||||| |||||||| || ||| ||  ||||| | | |   |   |  |      |    |  | |  ||| | || | |       | | |  | |  ||  | || | ||||||   ||| | |  |                               
AGGTACTTCTTCTTGCGGGAAGTGGAATTTGGCAATGACGGGGACTATTCAGAGGAACGCTTTATCAATATAGTCAATGCGCATCTTGCCAACACCATTGgtatttctactcaaagcacctttgtttctggagtataaaacgtcttgatggcttttagatttttctttagctggtgtagaagtttttcaccaatgcgcatctttatttgttgttaatgatcattctctcatcttaaacag

upper sequence: AT3G55400.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 8
AGGTATTTCTTCCTACGGGAGGTTGAATTTGGAAACGATGGGGACTATTCAGAAGACCGATTTATAAAAATCGTCAATGCACATCTCGCCAACACTATAGgt-ttcttactcta-cgaaaactaaatcttaagtagttgttcagccttttggttatttggtacag--aacttgtttctgaaaaatgttta-tcaatgcatttctcttcag----------------------------------------------
|||||||||||| | ||||| || |||||||| || |||||||||||||||||||| || ||||| || || || ||||| ||||| || || || || ||| ||  ||||  |   |    |   ||| ||  |  | |  |   ||   ||    ||  |  |  |     |||        | || | |   |||   |   ||| |                                              
AGGTATTTCTTCTTGCGGGAAGTAGAATTTGGCAATGATGGGGACTATTCAGAAGAACGCTTTATCAATATAGTGAATGCTCATCTTGCTAATACAATTGgtatttctacttaaattacctttgtttctgaaacatgtatatacaattcatgtgtgctgaaattgttatgccattttccttctttcttcacttggtgctccttgtttctgcctatgcatctttatgtgttaataactatctcactgtcttgaacag

upper sequence: AT3G55400.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 8
AGGTATTTCTTCCTACGGGAGGTTGAATTTGGAAACGATGGGGACTATTCAGAAGACCGATTTATAAAAATCGTCAATGCACATCTCGCCAACACTATAGgt-ttcttactctacgaaaactaaatcttaagtagttgttca-----gccttttggttatttggtacagaacttgtttctgaaaaatgtttatcaatgcatttctcttcag------------------------------------------------
|| || || |||||  ||||||| |||||||| || ||||||||||| || || ||||| || || || || |||||||||||||| |||||||| || ||| ||  |||| |        |   | ||   |  |   | |      | |     || ||   |  || | ||| ||        | || ||  ||| |||   ||                                                    
AGATACTTTTTCCTTAGGGAGGTGGAATTTGGCAATGATGGGGACTACTCGGAGGACCGCTTCATCAATATTGTCAATGCACATCTTGCCAACACAATTGgtatttctactttgtttttttttttttttctatcttctctaacgcctacttccccctttttccattaaggatttggttgctttgctttttcattcatg-attggactctgaaggtagggtggcaatacataagatgacctttgtacctactctatgcag