1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCAGCCAAGACAGCCGATAACATAAATCAACTGTTTGAGgtgtgcacttctttcttgcctctgatttatgatcgattttcttgtcctctgcatttattgagatcttattatccgtttctttcattgctttggaattgga...
species | Arabidopsis thaliana |
transcript | AT3G54840.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCAACTGTTTGAG GAAAATTGGCAAGAGGCTACCTCGTCCTGCTCCTTCGTCATGATTGGAGTGEST: gi|164015616|gb|ES136237.1|ES136237
genomic: TCAACTGTTTGAGgtgtgcactt ... tgtctgatagG-AAATTGGCAAGAGGCTACCTCGTCCTGCTCCTTCGTCATGATTGGAGTG
EST: GCCAAGACAGCCGATAACATAAATCAACTGTTTGAG GAAATTGGCAAGAGGCTACCTCGTCCTGCTCCTTCGTCATGATTGGAGTGTEST: gi|86076625|gb|DR372382.1|DR372382
genomic: GCCAAGACAGCCGATAACATAAATCAACTGTTTGAGgtgtgcactt ... tgtctgatagGAAATTGGCAAGAGGCTACCTCGTCCTGCTCCTTCGTCATGATTGGAGTGT
EST: TCATTGAGACGTCAGCCAAGACAGCCGATAACATAAATCAACTGTTTGAG GAAATTGGCAAGAGGCTACCTCGTCCTGCTCCTTCGTCATGATTGGAGTGTEST: gi|19741794|gb|AU227147.1|AU227147
genomic: TCATTGAGACGTCAGCCAAGACAGCCGATAACATAAATCAACTGTTTGAGgtgtgcactt ... tgtctgatagGAAATTGGCAAGAGGCTACCTCGTCCTGCTCCTTCGTCATGATTGGAGTGT
EST: TCATTGAGACGTCAGCCAAGACAGCCGATAACATAAATCAACTGTTTGAG GAAATTGGCAAGAGGCTACCTCGTCCTGCTCCTTCGTCATGATTGGAGTGTEST: gi|86078142|gb|DR373899.1|DR373899
genomic: TCATTGAGACGTCAGCCAAGACAGCCGATAACATAAATCAACTGTTTGAGgtgtgcactt ... tgtctgatagGAAATTGGCAAGAGGCTACCTCGTCCTGCTCCTTCGTCATGATTGGAGTGT
EST: TCATTGAGACGTCAGCCAAGACAGCCGATAACATAAATCAACTGTTTGAG GAAATTGGCAAGAGGCTACCTCGTCCTGCTCCTTCGTCATGATTGGAGTGT
genomic: TCATTGAGACGTCAGCCAAGACAGCCGATAACATAAATCAACTGTTTGAGgtgtgcactt ... tgtctgatagGAAATTGGCAAGAGGCTACCTCGTCCTGCTCCTTCGTCATGATTGGAGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCAGCCAAGACAGCCGATAACATAAATCAACTGTTTGAGgtgtgcacttctttcttgcctctgatttatgatcgattttcttgtcctctgcatttattgagatcttattatccgtttctttcattgctttggaattgga
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