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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATGGGATATAGCATGTTTGGAGAATCAACAGAATCACAGTTTACTCTTAACTTGCCTCAAGATTTGGTTGCATCTAAGATTGCTTTGTGGACTACAgtaagtttttttttttcacccttcctctgcttattacatgaaagttgggatgattttcactaaatttggtagctagccaggtgaggtcatctaagagtttttttccttgccttttttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G54830.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54830.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv13s0019g04660.t01 (Vitis vinifera), 5'ss of exon 9
TGTTATGGGATATAGCATGTTTGGAGAATCAACAGAATCACAGTTTACTCTTAACTTGCCTCAAGATTTGGTTGCATCTAAGATTGCTTTGTGGACTACAgtaagtttttttttttcacccttcctctgcttattacatgaaagttgggatgattttcactaaatttggtagctagccaggtgaggtcatctaagagtttttttccttgccttttttgcag
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TGTGTTGGGATACCAAATGTTTGGAGAATCAACATTATCACAATTCACTCTTAACATGCCCCAAGATTTGGTTGCCTCTAAGATTGCAGTGTGGACAACGgtatgctcatgaaagttttcattatagagttcagagtctctaatttgttct--ttgttacatgatccctagactaaccat-tattctcttagaggaatgtaag------------------