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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAATGGGGTCCTTTGCATCATGTTCGTGTTATTCGGGAGCAAAATTCTGGGATTTCTCGTGGATTTGCTTTTATTGATTTCCCCACGGTGgtatttgctttcaactaatctgttaattccttgcgctttttcttgtgatttcttcaacactgtgtgcatttatgtattttgtctgagcag

Basic information

species Arabidopsis thaliana
transcript AT3G54230.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54230.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G173777_T01 (Zea mays), 5'ss of exon 6
GCTGAATGGGGTCCTTTGCATCATGTTCGTGTTATTCGGGAGCAAAATTCTGGGATTTCTCGTGGATTTGCTTTTATTGATTTCCCCACGGTGgtatttgctttcaactaatctgttaattccttgcgctttttcttgtgatttcttcaacactgtgtgcatttatgtattttgtctgagcag
||| | ||||| ||| | |    ||| ||||| ||  |||| |  |||||||| || ||||||||||||||||||||||| |||||||| |||||| |    |  ||| | | |    | || |  |    |||| |||  | |   |||  |||| | | | |    |              
GCTCAGTGGGGACCTCTACGCAGTGTGCGTGTGATCAGGGAACGGAATTCTGGCATGTCTCGTGGATTTGCTTTTATTGACTTCCCCACTGTGgtactaa--taaaacaagtgttactactcatc-caaactttcgtgtactgttaacaaagctgtatcc-tctccacag-------------

upper sequence: AT3G54230.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G151614_T03 (Zea mays), 5'ss of exon 7
GCTGAATGGGGTCCTTTGCATCATGTTCGTGTTATTCGGGAGCAAAATTCTGGGATTTCTCGTGGATTTGCTTTTATTGATTTCCCCACGGTGgtatttgctttcaactaatctgttaattccttgcgctttttcttgtgatttcttcaacactgtgtgcatttatgtattttgtctgagcag
 || | ||||| ||| | |    ||| ||||| ||   ||| |  |||||||| || ||||||||||||||||||||||| ||| |||| |||||| |     ||||  ||  |||||     || |     |  |    | |||      |||||   ||    |||||  | ||    |||
TCTCAGTGGGGCCCTCTACGCAGTGTACGTGTGATCAAGGAACGGAATTCTGGCATGTCTCGTGGATTTGCTTTTATTGACTTCTCCACTGTGgtactaa---tcaaacaag-tgtta-----ttacatcactcatccaaacttccatgg-actgttaacacagctgtatcctttcca--cag

upper sequence: AT3G54230.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G35510.1 (Glycine max), 5'ss of exon 5
GCTGAATGGGGTCCTTTGCATCATGTTCGTGTTATTCGGGAGCAAAATTCTGGGATTTCTCGTGGATTTGCTTTTATTGATTTCCCCACGGTGgtatttgctttcaactaatctgttaattccttgcgctttttcttgtgatttcttcaacactgtgt-gcat-ttatgtattttgtctgagcag
||||||||||||||  | | |||||||||||||||   ||||  |||||||||  | |||||||||||||| || |||||||| ||  |  ||||||||    |    | || |   ||| |  |    ||| | |  ||||||  | ||| |||| | | || | || |||| ||  | ||   
GCTGAATGGGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTATGgtatttatcat--gtttattttccaatgctata---tttatgtcttgatttgatgaacgctgtattgaatgtaatatattatggattag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164169302|gb|ES026624.1|ES026624
EST:     GATTTGCTTTTATTGATTTCCCCACGGTG                         GATGCCGCACGCACCATGGATGGATAGAATTGAGCA
genomic: GATTTGCTTTTATTGATTTCCCCACGGTGgtatttgctt ... gtctgagcagGATGCCGCACGCACCATG-ATGGATAGAATTGAGCA
EST: gi|164127658|gb|ES051708.1|ES051708
EST:     GATTTGCTTTTATTGATTTCCCCACGGTG                         GATGCCGCACGCACCATGATGGATAGAATTGAGCA
genomic: GATTTGCTTTTATTGATTTCCCCACGGTGgtatttgctt ... gtctgagcagGATGCCGCACGCACCATGATGGATAGAATTGAGCA