1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGATATTGCTGCTTTCTATGAGACTTACTATACAAACAAGGGAGTGAAGATCATTAAAGGAACAGTGGCATCTGGGTTCACAGCTCAGCCAAATGGAGAGgtaatcaaagaaacattagctaatagagtgggcaatccaatttaagttttggtttgattttatagaaactaaagtctaaaaccaaattacaatgttatgtttaggtttggtttcgtttgacgaactcgattaattagcttttccaaatggtctcgttgcaaatgtcttacttgtattatataatcctccag
species | Arabidopsis thaliana |
transcript | AT3G52880.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCAAATGGAGAG GTGAAGGAAGTACAACTCAAGGATGGGAGGACATTGGAAGCCGACATTGTGEST: gi|125041224|gb|EL113493.1|EL113493
genomic: CCAAATGGAGAGgtaatcaaag ... aatcctccagGTGAAGGAAGTACAACTCAAGGATGGGAGGACATTGGAAGCCGACATTGTG
EST: ATTAAAGGAACAGTGGCATCTGGGTTCACAGCTCAGCCAAATGGAGAG GTGAAGGAAGTACAACTCAAGGATGGGAEST: gi|125229182|gb|EL243267.1|EL243267
genomic: ATTAAAGGAACAGTGGCATCTGGGTTCACAGCTCAGCCAAATGGAGAGgtaatcaaag ... aatcctccagGTGAAGGAAGTACAACTCAAGGATGGGA
EST: CAGTGGCATCTGGGTTCACAGCTCAGCCAAATGGAGAG GTGAAGGAAGTACAACTCAAGGATGGGAGGACATTGGAAGCCGACATTGTGEST: gi|124778146|gb|EH868089.1|EH868089
genomic: CAGTGGCATCTGGGTTCACAGCTCAGCCAAATGGAGAGgtaatcaaag ... aatcctccagGTGAAGGAAGTACAACTCAAGGATGGGAGGACATTGGAAGCCGACATTGTG
EST: ATTTAAAGGAACAGTGGCATCTGGGTTCACAGCTCAGACCAAATGGAGAG GTGAAGGAAGTACAACTCAAGGATGGGAGGACATT
genomic: A-TTAAAGGAACAGTGGCATCTGGGTTCACAGCTCAG-CCAAATGGAGAGgtaatcaaag ... aatcctccagGTGAAGGAAGTACAACTCAAGGATGGGAGGACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATATTGCTGCTTTCTATGAGACTTACTATACAAACAAGGGAGTGAAGATCATTAAAGGAACAGTGGCATCTGGGTTCACAGCTCAGCCAAATGGAGAGgtaatcaaagaaacattagctaatagagtgggcaatccaatttaagttttggtttgattttatagaaactaaagtctaaaaccaaattacaatgttatgtttaggtttggtttcgtttgacgaactcgattaattagcttttccaaatggtctcgttgcaaatgtcttacttgtattatataatcctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA