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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTAGCAATTGGTGAATGTGGATTGGATTATGACAGGCTTCAATTTTGCTCAGTTGATATCCAGAAGAAgtaagtttgatcataaaaagtttcatgtttacattgttttcttctatttgaaatatcttcctatgttttctttgttgagaaag

Basic information

species Arabidopsis thaliana
transcript AT3G52390.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G52390.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G051032_T01 (Zea mays), 5'ss of exon 8
-----------------------------GTGGTAGCAATTGGTGAATGTGGATTGGATTATGACAGGCTTCAATTTTGCTCAGTTGATATCCAGAAGAAgtaagtttgatcataaaaagtttcatgtttacattgttttcttctatttgaaatatcttcctatgttttctttgttgagaaag
                             || || || |||||||||||||| |||||||||||||| ||||| || ||  | |  ||||| || ||||||||  |   ||| |      |   |||   |||   ||  | | || |  |   || |     || ||| |||  |   |   
CAATCTTACATGAGTTCCAAGTTTTGCAGGTCGTTGCTATTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTCCGGCAGATATGCAAAAGAAgta--tacaatcttgttc--tcctatgcacacaa-attggcatttaatctattcatttctgagtgatttattttgtattag--

upper sequence: AT3G52390.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G095969_T01 (Zea mays), 5'ss of exon 6
GTGGTAGCAATTGGTGAATGTGGATTGGATTATGACAGGCTTCAATTTTGCTCAGTTGATATCCAGAAGAAgtaagtttgatcataaaaagtttcatgtttacattgtttt-cttctatttgaaatatcttcctatgttttctttgttgagaaag
|| || ||  ||||||||||||| |||||||||||||| ||||| || ||  | |  ||||| || ||||||||  |   ||| |      | || | |  |||    ||  | | || |  |   || |     || ||| |||  |   |   
GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTCCGGCAGATATGCAAAAGAAgta--tacaatcttgt----tctcctatgcacagaaattggcatttaatctattcatttctgagtgatttattttgtattag--

upper sequence: AT3G52390.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM5G894029_T01 (Zea mays), 5'ss of exon 15
-----------------------------GTGGTAGCAATTGGTGAATGTGGATTGGATTATGACAGGCTTCAATTTTGCTCAGTTGATATCCAGAAGAAgt----aagtttgatc------ataaaaagtttcatgtttacattgttttcttctatttgaaatatcttcctatgttttctttgttgagaaag-------
                             || || ||  ||||||||||||| |||||||||||||| ||||| || ||  |    ||||| || || ||||    ||  ||| ||        | | |  ||    ||||   | ||   |||||  |||  ||| ||    |   | |||||   |  ||        
CAATCTTACATGAGTTCCAAGTTTTGCAGGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTCCGACAGATATGCAAAAAAAgtatagaatcttgttctcctatgcacacaaattggcatttaatctattcatttctaagtgatttattttgtattaggtactttgagaaacaatttgagtt

upper sequence: AT3G52390.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G704381_T01 (Zea mays), 5'ss of exon 1
-----------------------------GTGGTAGCAATTGGTGAATGTGGATTGGATTATGACAGGCTTCAATTTTGCTCAGTTGATATCCAGAAGAAgtaagtttgatcataaaaagtttcatgtttacattgttttcttctatttgaaatatcttcctatgttttctttgttgagaaag
                             || || ||  ||||||||||||| |||||||||||||| ||||| || ||  | |  ||||| || ||||||||  |   ||| |      |   |||   |||   ||  | | || |  |   || |     || ||| |||  |   |   
CAATCTTACATGAGTTCCAAGTTTTGGAGGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTCCGGCAGATATGCAAAAGAAgta--tacaatcttgttc--tcctatgcacacaa-attggcatttaatctattcatttctgagtgatttattttgtattag--

upper sequence: AT3G52390.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G081668_T01 (Zea mays), 5'ss of exon 1
-----------------------------GTGGTAGCAATTGGTGAATGTGGATTGGATTATGACAGGCTTCAATTTTGCTCAGTTGATATCCAGAAGAAgtaagtttgatcataaaaagtttcatgtttacattgttttcttctatttgaaatatcttcctatgttttctttgttgagaaag
                             || || ||  ||||||||||||| |||||||||||||| ||||| || ||  | |  ||||| || ||||||||  |   ||| |      |   |||   |||   ||  | | || |  |   || ||    || ||| |||  |   |   
CAATCTTACATGAATTCCAAGTTTTGCATGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTCCGGCAGATATGCAAAAGAAgta--tacaatcttgttc--tcctatgcacacaa-attggcatttaatctattcatttttgagtgatttattttgtattag--

upper sequence: AT3G52390.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G38780.1 (Glycine max), 5'ss of exon 7
GTGGTAGCAATTGGTGAATGTGGATTGGATTATGACAGGCTTCAATTTTGCTCAGTTGATATCCAGAAGAAgtaagtttgatcataaaaagtttcatgtttacattgttttcttctatttgaaatatcttcctatgttttctt------tgttgagaaag-------------------------------------
||||| |||||||| |||||||||||||| |||||||||||||| |||||| |||  || || || |||||||| |     |||  |  |  || ||  |   | ||| | ||  ||  |    |    |  |||  ||| ||      | || | | |                                      
GTGGTTGCAATTGGAGAATGTGGATTGGACTATGACAGGCTTCATTTTTGCCCAGCAGAGATTCAAAAGAAgtatgcagtctcacgattacctttat--tagaaatgtgtcctattaactccttttctcttttattgttttttgtaatatattaaaataatcaaccagtcatttgttttcttatctgtgaaatcaag

upper sequence: AT3G52390.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv08s0032g01170.t01 (Vitis vinifera), 5'ss of exon 7
GTGGTAGCAATTGGTGAATGTGGATTGGATTATGACAGGCTTCAATTTTGCTCAGTTGATATCCAGAAGAAgta---agtttgatca--taaaaagtttcatgtttacattgttttcttctatttgaaatatcttcctatgttttctttgttgagaaag------------------------------------
||||| |||||||||||||||||||||||||| ||||||||||| |||||| ||  |||  | |||||||||||    ||||| |||   ||||| | |   |  ||  ||  ||||||   | ||   ||  |||  ||  ||| | | |  |  ||                                     
GTGGTGGCAATTGGTGAATGTGGATTGGATTACGACAGGCTTCACTTTTGCCCATCTGAGGTTCAGAAGAAgtatgtggtttgttcagacaaaaattgtttggcatatgttcctttctta-gtatgttttagtttctcattctttttctttcaatcaaatgaaggcatgtttgcactgttcgtttgttacattag