1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGTGTAGTGGTTGAAGACAGCGCGATCGGGCTAGCAGCTGCAAAAGCTGCGGGAATGACTTGTATAGTTACAAAGAGTGGgtgagttttagtctgaaatcagaatcctattcataattccataacaatcagaattgaaatgatcattcgttctttcatctttggaattgtag
species | Arabidopsis thaliana |
transcript | AT3G48420.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTAGCAGCTGCAAAAGCTGCGGGAATGACTTGTATAGTTACAAAGAGTGG ATACACGGCTGATGAAGATTTCGAGAACGCAGATGCGGTTTTCGACTGCATEST: gi|19798937|gb|AU230227.1|AU230227
genomic: CTAGCAGCTGCAAAAGCTGCGGGAATGACTTGTATAGTTACAAAGAGTGGgtgagtttta ... ggaattgtagATACACGGCTGATGAAGATTTCGAGAACGCAGATGCGGTTTTCGACTGCAT
EST: CTAGCAGCTCCAAAAGCTCCGGGAATGACTTGTATAGTTACAAAGAGTGG ATACACGGCTGATGAAGATTTCGAGAACGCAGATGCGGTTTTCGACTGCATEST: gi|124777261|gb|EH867204.1|EH867204
genomic: CTAGCAGCTGCAAAAGCTGCGGGAATGACTTGTATAGTTACAAAGAGTGGgtgagtttta ... ggaattgtagATACACGGCTGATGAAGATTTCGAGAACGCAGATGCGGTTTTCGACTGCAT
EST: ACTTGTATAGTTACAAAGAGTGG ATACACGGCTGATGAAGATTTCGAGAACGCAGATGCGGTTTTCGACTGCATEST: gi|86086839|gb|DR382598.1|DR382598
genomic: ACTTGTATAGTTACAAAGAGTGGgtgagtttta ... ggaattgtagATACACGGCTGATGAAGATTTCGAGAACGCAGATGCGGTTTTCGACTGCAT
EST: CTAGCAGCTGCAAAAGCTGCGGGAATGACTTGTATAGTTACAAAGAGTGG ATACACGGCTGATGAAGATTTCGAGAACGCAGATGCGGTTTTCGACTGCATEST: gi|125301859|gb|EL315944.1|EL315944
genomic: CTAGCAGCTGCAAAAGCTGCGGGAATGACTTGTATAGTTACAAAGAGTGGgtgagtttta ... ggaattgtagATACACGGCTGATGAAGATTTCGAGAACGCAGATGCGGTTTTCGACTGCAT
EST: GTAGCAGCTGCAAAAGCTGCGGGAATGACTTGTATAGTTACAAAGAGTGG ATACACGGCTGAEST: gi|125141495|gb|EL178996.1|EL178996
genomic: -TAGCAGCTGCAAAAGCTGCGGGAATGACTTGTATAGTTACAAAGAGTGGgtgagtttta ... ggaattgtagATACACGGCTGA
EST: ATAGTTACAAAGAGTGG ATACACGGCTGTATGAAGATTTCGAGAACGCAGATGCGGTTTTCGACTGCA
genomic: ATAGTTACAAAGAGTGGgtgagtttta ... ggaattgtagATACACGGCTG-ATGAAGATTTCGAGAACGCAGATGCGGTTTTCGACTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGTAGTGGTTGAAGACAGCGCGATCGGGCTAGCAGCTGCAAAAGCTGCGGGAATGACTTGTATAGTTACAAAGAGTGGgtgagttttagtctgaaatcagaatcctattcataattccataacaatcagaattgaaatgatcattcgttctttcatctttggaattgtag
- - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - AGCTGC