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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGATTATGAAAACCCTGGAGCATCCTAATATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGGgtatttctttccctctgctttgtatatcgttacctcaagtctttctctttgtctgtcatcttatattgtgttgtttcttgtatag

Basic information

species Arabidopsis thaliana
transcript AT3G45240.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g50330.1 (Oryza sativa), 5'ss of exon 6
GTTATGATTATGAAAACCCTGGAGCATCCTAATATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGGgtatttcttt-ccctctgctttgtatatcgttacctcaagtctttctctttgtctgtcatcttatattgtg-ttgtttcttgtatag---------------------------------------------------------
||    || |||||||   |||| ||||||||||| || ||||||||||| ||||||||||||||  |    ||| | || ||||||||||| |  |  |  |||  ||| | |      |  |    || || | |||   |||    | | ||| |  ||| |   | |  ||                                                         
GTATCCATCATGAAAATGTTGGATCATCCTAATATAGTAAATCTCATTGAAGTGATTGATGACCCAAATGCAGATAAATTCTACATGGgtatgtaatgacattctcattttttttaaaaaaaatagtttccttttgtttaattgtagcatgagatttttcttgctaacttttgagcatctttatttaattctccatattattctacctaacattgtccattggtattgccag

upper sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 7
GTTATGATTATGAAAACCCTGGAGCATCCTAATATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGGgtatttct-------ttccctctgctttgtatat---cgttacctcaagtct-------ttctctttgtctgtcatcttatattg-tgttgtttcttgtatag
||| | ||||||||||  ||||| ||||||||||| || |||||||||||||||||||||||||| |||   ||  | || ||||||||||||  |       |||    || ||| ||| |     | |  | || |         | |  ||    |  ||   |  | || || | ||||||||| ||
GTTCTCATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGACGGACAACTTCTACATGGgtattgatgactagtttcttcttggtttatatctgtatttgagtttaaatgaagaagaatacctttgaggtcccacgcttgactgctgatttttcttgtacag

upper sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA13G40190.1 (Glycine max), 5'ss of exon 7
GTTATGATTATGAAAACCCTGGAGCATCCTAATATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGGgtatttctttccctctgctttgta-tatcgttacct--caagtctttctctttgtctgtcatcttatattgtgttgtttcttgtatag----------------------------------------------------
||  ||||||||||||   |||| ||||||||||| || ||||||||||||||||||||||| || ||||  ||||| || |||||||||| |   | |    |||||  |  | | ||||  |  | |    | ||| |    | |   | ||| |  |   |  ||  |  ||                                                     
GTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGgtactcaatgctagttgcttcttggttttgttatatagcgatgactgctcctgtaatttgtacatatgtatttgagcctcgagcttaattaagaatctccaataagttctatgcttaactgctgttgtttacttttacag

upper sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G29640.4 (Glycine max), 5'ss of exon 5
GTTATGATTATGAAAACCCTGGAGCATCCTAATATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGGgtatttctt-----tccctctgctttgt-atatcgttacctcaagtctttctctttgtctgtcatcttatattgtgttgtttcttgtatag---------------------------------------------
||  ||||||||||||   |||| ||||||||||| || ||||||||||||||||||||||| || ||||  ||||| || ||||||||||     |     |  ||  | ||||| || | || |   ||  || |    |||||   |    ||  |   |   ||||  |  | |                                              
GTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGgtacccaatgctagtttcttggttttgttatttagtgatgacagctcctgtaatttgtacatatgttttgagcctcaagtttaattaagaatctccaataagttctatgattaactgccgttgtttacttttacag

upper sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA11G20690.1 (Glycine max), 5'ss of exon 6
GTTATGATTATGAAAACCCTGGAGCATCCTAATATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGGgtatttctttccctctgctttgtatatcgttacctcaagtctttctctttgtctgtcatcttatattgtgttgt-ttcttgtatag---------------------------------
||| | ||||||||||  ||||| ||||||||||| ||  |||||||||||||||||||||||||  |||  ||| | || |||||||||| |  ||      || ||     |    |||  |     ||| | | ||| | | |  |||  |   |  |  | | | |  ||                                 
GTTCTCATTATGAAAATGCTGGAACATCCTAATATAGTCGATCTCATTGAGGTGATTGATGACCCACAGTCAGATAACTTCTACATGGgtactgattctttagtgattg----actactactcctgtcatttatatctgtatttgagtttaagtgaagaagaatacctttgaagttccatgcttgactgctgatttttcttgtacag

upper sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 5'ss of exon 7
GTTATGATTATGAAAACCCTGGAGCATCCTAATATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGGgtatttctttccctctgctttgtatatcgttacctcaagtctttctctttgtctgtcatcttatattgtgttg----tttcttgtatag---------------------------------------------------------------------
||| |||| |||||||   || | ||||| ||||| || ||||||||||||||||||||||||||       ||| | || || |||||||||| || ||   | ||||   | || ||   |  | | |||| | |    |    |  |  | | ||||     ||||||| ||                                                                       
GTTTTGATCATGAAAATGTTGAACCATCCAAATATAGTCAATCTCATTGAGGTGATTGATGACCCAAGCACAGATCACTTCTATATGGgtatttattgccactttctttccct-tctttgtatgcattttttcccatcaaattatgtgattaagtatgttaaccttttcttgcatgaagattttactttttaaaaattagcaggttaatttactgtttgactgcaaattcatttttttttcttcag