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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAGTAGACCTTGTGACGGGACAAACCACAGTTCTACAGACAGATATCTTATATGACTGTGGAAAAAGTCTCAATCCCGCTGTCGATTTAGGACAGgtaatatatatgaagagagacctcagaaagcaaatgaatcttttttgtaatgtgttttgtgtgtttctgcttcag

Basic information

species Arabidopsis thaliana
transcript AT3G43600.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G43600.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G44000.3 (Glycine max), 5'ss of exon 8
GTTGAAGTAGACCTTGTGACGGGACAAACCACAGTTCTACAGACAGATATCTTATATGACTGTGGAAAAAGTCTCAATCCCGCTGTCGATTTAGGACAGg-----taatatatatg-aagagagacctcaga---aagcaaatgaatcttttttgtaatgtgttttgt-gtgtttctgcttcag---------------
|| ||| |||| ||| |||| ||| |||||| |  | | |||||||||||  | ||||| |||||| | |||||||| || ||||| |||||||||||||     |||||||||||   | || |    | |    |   | |||| || |||    ||   |    |   |  |     | |                
GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAGgtaagctaatatatatgtgggtgaaattataaatctgaaagactgaaactatttaactatacatgagatcaagaataaaagttaatagtacattactatt

upper sequence: AT3G43600.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv18s0041g02390.t01 (Vitis vinifera), 5'ss of exon 7
GTTGAAGTAGACCTTGTGACGGGACAAACCACAGTTCTACAGACAGATATCTTATATGACTGTGGAAAAAGTCTCAATCCCGCTGTCGATTTAGGACAGgt-aatatatatgaag----agagacctcagaaagcaaatgaatcttttttgtaatgtgttttgtgtgttt-ctgcttcag-------------------
|| |||||| | ||| | || ||| |||||||| || | ||  | |||||  |||||||||||||  |||| ||||| || ||||| |||||||||||||| |    |  |  |     | |    || |    |   |     ||| |  |  |  | ||||  |  |  |  ||| |                    
GTGGAAGTAAATCTTCTCACTGGAGAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGGCAAAGCCTCAACCCTGCTGTGGATTTAGGACAGgtcagcccaactacaatcttaaaatattctgtttccttctctgcttttctattcctaagctttgattaatcacaacttgaattcaatttttacttccatt

upper sequence: AT3G43600.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv18s0041g02430.t01 (Vitis vinifera), 5'ss of exon 8
GTTGAAGTAGACCTTGTGACGGGACAAACCACAGTTCTACAGACAGATATCTTATATGACTGTGGAAAAAGTCTCAATCCCGCTGTCGATTTAGGACAGgtaatatatatgaagagagacctcagaaagcaaatgaatcttttttgtaatgtgttttgtgtgtttctgc-ttcag----------------------------
|| || ||| | ||| | || |||||||||||| || | ||  | |||||  |||||||||||||  | |||||||| || ||||| ||||||||||||||    ||    ||     |  | | |            ||| | ||   |    |   |  | ||  || ||||                             
GTGGAGGTAAATCTTCTCACTGGACAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGTCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGgt----tagcccaactacaatattaaactatttcatctccttctctgcttttctatccctaagctttggcattcaacctcttctctgattttattctccacatc

upper sequence: AT3G43600.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv18s0041g02410.t01 (Vitis vinifera), 5'ss of exon 7
GTTGAAGTAGACCTTGTGACGGGACAAACCACAGTTCTACAGACAGATATCTTATATGACTGTGGAAAAAGTCTCAATCCCGCTGTCGATTTAGGACAGgtaa---tatatatgaagagagacc--tcagaaagcaaatgaatcttttttgtaatgtgttttg-tgtgtttctgcttcag-------------------
|| || ||| | ||| | || |||||||||||| || | ||  | |||||  |||||||||||||  | |||||||| || ||||| |||||||||||||| |    |  ||  | |  | ||   |       |   |  |  ||| |     |  | ||||   |    |  ||||                     
GTGGAGGTAAATCTTCTCACTGGACAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGTCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaactacaatgttaaactatttcatctccttctctacttttctatccctaagctttggcattcaacctcttccctgattttattctccacatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125116403|gb|EL165958.1|EL165958
EST:     TCTTATATGACTGTGGAAAAAGTCTCAATCCCGCTGTCGATTTAGGACAG                         ATTGAAGGATCTTTTTGTTCAAGGACTTTGGGTTTTTCA
genomic: TCTTATATGACTGTGGAAAAAGTCTCAATCCCGCTGTCGATTTAGGACAGgtaatatata ... tctgcttcagATTGAAGGATCTTTT-GTTCAAGGACTT-GGGTTTTTCA