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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATAATGCTGTTTCACTACGATGGCCGGGCAAGCGAATGGGAAGAGTTTGAATGGTCCAAGCGAGCCATTCATGTGAGCATTCGGAAACAAACAAAATGgttagtggcctctttactaagcaggaacgccaatcttcttcctagtaggagtttctttgtcatgacagatttacttaacaatctatgaattttccctgaag

Basic information

species Arabidopsis thaliana
transcript AT3G27470.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27470.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv14s0066g00310.t01 (Vitis vinifera), 5'ss of exon 5
CTATAATGCTGTTTCACTACGATGGCCGGGCAAGCGAATGGGAAGAGTTTGAATGGTCCAAGCGAGCCATTCATGTGAGCATTCGGAAACAAACAAAATGgttagtggcctcttta-ctaagcaggaacgccaatcttct-tcctagtaggagtttctttgtcatgac--agatttacttaa--ca-atctatgaattttccctgaag-----------
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CCATTCTGCTATTTCATTATGATGGTCGGGTGAGCGAATGGGATGAGTTTGAATGGTCGAAACGGGCTATCCATGTGAGCGTTCAGAAGCAAACCAAATGgtgggtagctactttatcctcttaagaattccaaacttttatcattataggccatagtggattatcattgaggcatattgaagtcatgtttttcacgactccctgaaatttgcttcaag