1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTGgtaggtttatctttctctgttcgctggtgaacattgtattttctccctagactatgcaattaatactagatttagtttatgatcgatcaagttgacttag...
species | Arabidopsis thaliana |
transcript | AT3G27240.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTG ATGGGTTTCAAATGGATATTCCTACTCTCTCTCGCTCTTCTCCAAGCTGCTEST: gi|116435812|gb|EG478404.1|EG478404
genomic: TATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTGgtaggtttat ... ctatttgcagATGGGTTTCAAATGGATATTCCTACTCTCTCTCGCTCTTCTCCAAGCTGCT
EST: TATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTG ATGGGTTTCAAATGGATATTCCTACTCTCTCTCGCTCTTCTCCAAGCTGCTEST: gi|125217631|gb|EL231714.1|EL231714
genomic: TATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTGgtaggtttat ... ctatttgcagATGGGTTTCAAATGGATATTCCTACTCTCTCTCGCTCTTCTCCAAGCTGCT
EST: TATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTG ATGGGTTTCAAATGGATATT
genomic: TATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTGgtaggtttat ... ctatttgcagATGGGTTTCAAATGGATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTGgtaggtttatctttctctgttcgctggtgaacattgtattttctccctagactatgcaattaatactagatttagtttatgatcgatcaagttgacttag
- - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctag