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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAATTGAGCATCTCCTTCCAATCTTTCTTTCTCTATTGAAAGATGAGTTCCCGGATGTACGCTTGAACATTATCAGCAAACTTGACCAAGTGAATCAGgtttgttacaacagaaatacccaaaccagatcatgccaatggcttcatgataacatgttttgtttaaaagactttcactcttttaacttgcctttctcgcccatccatattcagttgatgacttctatattttatatgtggcag

Basic information

species Arabidopsis thaliana
transcript AT3G25800.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G102858_T01 (Zea mays), 5'ss of exon 8
AACAATTGAGCATCTCCTTCCAATCTTTCTTTCTCTATTGAAAGATGAGTTCCCGGATGTACGCTTGAACATTATCAGCAAACTTGACCAAGTGAATCAGgtttgttacaacagaaatacccaaaccagatcat---gccaatggcttcatgataacatgttttgtttaaaagactttcactcttttaacttgcctttctcgcccatccatattcagttgatgacttctatattttatatgtggcag
 ||  |||| || || ||||| || ||||||||| |  |||| ||||||||||| ||||| ||  | |||||||| ||||||||||| ||||| || |||||  ||  |     |     |||| | |  |  |     | ||     |||  |  | || |||||| | |||  | | |    || || ||   ||  | |                                             
CACTCTTGAACAACTGCTTCCCATTTTTCTTTCTTTGCTGAAGGATGAGTTCCCTGATGTTCGACTCAACATTATAAGCAAACTTGATCAAGTTAACCAGgtcagtggctggctaccctgccaagctatgtagtttaagctataaacgcatattttcctgctttgttcacaag--tattagcacttgaaattttgttggtag---------------------------------------------

upper sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 8
AACAATTGAGCATCTCCTTCCAATCTTTCTTTCTCTATTGAAAGATGAGTTCCCGGATGTACGCTTGAACATTATCAGCAAACTTGACCAAGTGAATCAGgtttgttacaacagaaatacccaaaccagatcatgccaatggcttcatgataacatgttttgtttaaaagactttcactcttttaacttgcctttctcgcccatccatattcagttgatgacttctatattttatatgtggcag
|||||||||||| || ||||| || || ||||| || ||||| ||||| || || || |||||| | |||||||||||||| ||||| ||||||||||||||| |||| |       ||   ||   |  |  | |  |  |||| |         | ||| |||     || ||   || |||    |||   | |     || |                                      
AACAATTGAGCAGCTTCTTCCTATTTTCCTTTCCCTTTTGAAGGATGAATTTCCTGACGTACGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAGgtt-gttatattttctgtaattaatttaatt--ttctgaatgcttta---------gatttcttttggcaacctttgttccttttctctgctgatataattaattctagcat--------------------------------

upper sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 8
AACAATTGAGCATCTCCTTCCAATCTTTCTTTCTCTATTGAAAGATGAGTTCCCGGATGTACGCTTGAACATTATCAGCAAACTTGACCAAGTGAATCAGgtttgttacaacagaaatacccaaaccagatcatgccaatggcttcatgataacatgttttgtttaaaagactttcactcttttaacttgcctttctcgcccatccatattcagttgatgacttctatattttatatgtggcag
|||||||||||| || ||||| || || ||||| || ||||| ||||| || || || || ||| | |||||||||||||| ||||| ||||||||||||||| |||| |       ||   ||   |  |  | |  |  |||| |         | ||| |||     || ||  ||| |||    |||   | |     || |                                      
AACAATTGAGCAGCTTCTTCCTATTTTCCTTTCCCTTTTGAAGGATGAATTTCCCGACGTGCGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAGgtt-gttatagtttctgtagttaatttaatt--ttcagaatgcttta---------gatttcttttggcaaccttttctcctttcctctgctgatataattaattcgagcat--------------------------------

upper sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 8
AACAATTGAGCATCTCCTTCCAATCTTTCTTTCTCTATTGAAAGATGAGTTCCCGGATGTACGCTTGAACATTATCAGCAAACTTGACCAAGTGAATCAGgtttgttacaacagaaatacccaaaccagatcatgccaatggcttcatgataacatgttttgtttaaaagactttcactcttttaacttgcctttctcgcccatccatattcagttgatgacttctatattttatatgtggcag
|||||||||||| || ||||| || ||||| || || ||||| ||||| || || ||||||||| | || || || ||||| ||||| ||||||||||||||||||                     ||| | |   | ||| ||| |  |  ||  ||  | || | | ||||||       |   ||  | || | |    ||  |  | |     | | ||||                  
AACAATTGAGCAGCTTCTTCCTATTTTTCTCTCCCTTTTGAAGGATGAATTTCCTGATGTACGCCTAAATATCATAAGCAAGCTTGATCAAGTGAATCAGgtttgt---------------------agagcttttgagtggtttc-tatttgcaaatt--gctttataaactttcgacaaccttgttt--cctttttgtttttctctggtaatgctgttaattct------------------

upper sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 7
AACAATTGAGCATCTCCTTCCAATCTTTCTTTCTCTATTGAAAGATGAGTTCCCGGATGTACGCTTGAACATTATCAGCAAACTTGACCAAGTGAATCAGgtttgttacaacagaaatacccaaaccagatcatgccaatggcttcatgataacatgttttgtttaaaagactttcactcttttaacttgcctttctcgcccatccatattcagttgatgacttctatattttatatgtggcag
||||||||| || || |||||||| ||||||||||| ||||| ||||| || || ||||||||  | || || || ||||| ||||| ||| | |||||||||||| | ||   ||  |           |||   ||     ||  | ||   ||||  | |             |||  | || |  ||  ||||      |  | || || ||                            
AACAATTGATCAACTTCTTCCAATTTTTCTTTCTCTTTTGAAGGATGACTTTCCTGATGTACGACTAAATATCATTAGCAAGCTTGATCAAATAAATCAGgtttgtcataatttaaggagtt--------tcacatcagcctttttttaattttatgtgctctgc---------ctacttgtctagccagctattctactttttttaaatgcaattt---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164172537|gb|EL996395.1|EL996395
EST:     CTTGACCAAGTGAATCAG                         GTTATTGGGATTGATCTACTATCACAATCCTTGTTGCCAGCTATTGTAGAA
genomic: CTTGACCAAGTGAATCAGgtttgttaca ... tatgtggcagGTTATTGGGATTGATCTACTATCACAATCCTTGTTGCCAGCTATTGTAGAA
EST: gi|164153443|gb|ES023314.1|ES023314
EST:     TCCCGGATGTACGCTTGAACATTATCAGCAAACTTGACCAAGTGAATCAG                         GTTATTGGGATTGATCTAC
genomic: TCCCGGATGTACGCTTGAACATTATCAGCAAACTTGACCAAGTGAATCAGgtttgttaca ... tatgtggcagGTTATTGGGATTGATCTAC