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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTTTACCAATACGCTTACTCTTCCGGTAGTCAATGGTCCTACAGAAGGTCTTGCACTTATATACTGTGGCCATTTCTTCACAGCCATTGTTGgtaagcttcaacaatctaagaatatctctatcaccaacaattctttttcaatcttctatactttttttcttactctcaag

Basic information

species Arabidopsis thaliana
transcript AT3G25585.4
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116414049|gb|EG456641.1|EG456641
EST:     AGAAGGTCTTGCACTTATATACTGTGGCCATTTCTTCACAGCCATTGTTG                         GTGCGGAGTGGTGGGCTCAGCCGTTTGGGAAGTCGATTCCTTTGTTTAGTT
genomic: AGAAGGTCTTGCACTTATATACTGTGGCCATTTCTTCACAGCCATTGTTGgtaagcttca ... tactctcaagGTGCGGAGTGGTGGGCTCAGCCGTTTGGGAAGTCGATTCCTTTGTTTAGTT
EST: gi|301502798|gb|HO208338.1|HO208338
EST:     AGAAGGTCTTGCACTTATATACTGTGGCCATTTCTTCACAGCCATTGTTG                         GTGCGGAGTGGTGGGCTCAGCCGTTTGGGAAGTCGATTCCTTTGTTTAGTT
genomic: AGAAGGTCTTGCACTTATATACTGTGGCCATTTCTTCACAGCCATTGTTGgtaagcttca ... tactctcaagGTGCGGAGTGGTGGGCTCAGCCGTTTGGGAAGTCGATTCCTTTGTTTAGTT
EST: gi|116466773|gb|EG509365.1|EG509365
EST:     AGAAGGTCTTGCACTTATATACTGTGGCCATTTCTCCACAGCCATTGTTG                         GTGCGGAGTGGTGGGCTCAGCCGTTTGGGAAGTCGATTCCTTTGTTTAGTT
genomic: AGAAGGTCTTGCACTTATATACTGTGGCCATTTCTTCACAGCCATTGTTGgtaagcttca ... tactctcaagGTGCGGAGTGGTGGGCTCAGCCGTTTGGGAAGTCGATTCCTTTGTTTAGTT