1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AGGCAAAGACCACTATTGATTGTTTCTGAAGATGTGGAAAGTGATGCTCTTGCAACTCTTATCCTTAACAAGCTCCGTGCCGGAATTAAGgtttgaacaacagaagctcttactaccgtctcctgacttttagctatgacttctttgcttttagattaatagtttcctccctgcag
species | Arabidopsis thaliana |
transcript | AT3G23990.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGATGCTCTTGCAACTCTTATCCTTAACAAGCTCCGTGCCGGAATTAAG GTCTGTGCCATCAAGGCCCCTGGGTTTGGAGAGAATAGGEST: gi|163971030|gb|ES105824.1|ES105824
genomic: GTGATGCTCTTGCAACTCTTATCCTTAACAAGCTCCGTGCCGGAATTAAGgtttgaacaa ... ctccctgcagGTCTGTGCCATCAAGGCCCCTGGGTTTGGAGAGAATAGG
EST: GCCGGAATTAAG GTCTGTGCCATCAAGGCCCCTGGGTTTGGAGAGAATAGGAAGGCCAATTTAEST: gi|125295842|gb|EL309927.1|EL309927
genomic: GCCGGAATTAAGgtttgaacaa ... ctccctgcagGTCTGTGCCATCAAGGCCCCTGGGTTTGGAGAGAATAGGAAGGCCAATTT-
EST: GTGATGCTCTTGCAACTCTTATCCTTAACAAGCTCCGTGCCGGAATTAAG GTCTGTGCCATCAAGGCCCCTGGGTTTGGAGAGAATAGGAAGGCCAATTTG
genomic: GTGATGCTCTTGCAACTCTTATCCTTAACAAGCTCCGTGCCGGAATTAAGgtttgaacaa ... ctccctgcagGTCTGTGCCATCAAGGCCCCTGGGTTTGGAGAGAATAGGAAGGCCAATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCAAAGACCACTATTGATTGTTTCTGAAGATGTGGAAAGTGATGCTCTTGCAACTCTTATCCTTAACAAGCTCCGTGCCGGAATTAAGgtttgaacaacagaagctcttactaccgtctcctgacttttagctatgacttctttgcttttagattaatagtttcctccctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT