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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGAAGCTGTGAAAATCAACCGGCAAGGATTTGAGAAAAGAGTGGTTTCACAAGACCTACAACTTTGGCTCTCAAATgtgagttctgtttctctttactttcccgtaagaataaactctgctctgtgaaaattctgattctatgcgcatgttcacacgcag

Basic information

species Arabidopsis thaliana
transcript AT3G23700.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23700.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA18G00740.4 (Glycine max), 5'ss of exon 8
AATAGAAGCTGTGAAAATCAACCGGCAAGGATTTGAGAAAAGAGTGGTTTCACAAGACCTACAACTTTGGCTCTCAAATgtgagtt--ctgtttctctttactttcccgta-agaataaactctgctctgtg-aaaattctgattctatgcgcatgttcacacgcag
|||| | |  || | ||||| ||| ||||| ||||| ||||||||||| || |||||| | || |||||||| || ||||||||    ||   | ||   | ||| |  |   |  | |  | || | | |   || |||||| ||| |   | ||   || |    
AATATATGACGTAAGAATCAGCCGTCAAGGGTTTGAAAAAAGAGTGGTCTCGCAAGACTTGCAGCTTTGGCTTTCTAATgtgaggcagctagctttcacaatttttctttttggtctcagttttgatttctccgaatttctgaatctttcaacttggcaacgcag--

upper sequence: AT3G23700.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv05s0062g00830.t01 (Vitis vinifera), 5'ss of exon 8
AATAGAAGCTGTGAAAATCAACCGGCAAGGATTTGAGAAAAGAGTGGTTTCACAAGACCTACAACTTTGGCTCTCAAATgtgagttc--------tgtttctc--------tttactttcccgtaagaataaactctgctctgtgaaaattctgattct-atgcgcatgttcacacgcag---------------------------
 |||   | ||| | ||| |  || |||||||| |||||| |||| |||||||||||||| || || ||||| |||||||||||| |        ||||||          | ||  |||   ||    |  | ||| || |   ||  ||||  |  | ||   ||| || | ||                               
GATAAGTGATGTAAGAATTAGTCGTCAAGGATTCGAGAAACGAGTAGTTTCACAAGACCTGCAGCTCTGGCTTTCAAATgtgagtgcggggctgatgtttcatcaataacatctagcttcatctagttctttattcttcttta-aaattttctagtgttgattatcatttttatactttcttccaaaataatctttgcattatccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124718246|gb|EH809648.1|EH809648
EST:     TTTGGCCCTCAAAT                         ACACCGCCTTCTGATGGGAAGTTTGTTCTTCTTGCCCGTGCTGGAAGACAG
genomic: TTTGGCTCTCAAATgtgagttctg ... tcacacgcagACACCGCCTTCTGATGGGAAGTTTGTTCTTCTTGCCCGTGCTGGAAGACAG
EST: gi|116466810|gb|EG509402.1|EG509402
EST:     GATTTGAGAAAAGAGTGGTTTCACAAGACCTACAACTTTGGCTCTCAAAT                         ACACCGCCTTCTGATGGGAAGTTTGTTCTTCTTGCCCGTGCTGGAAGAC
genomic: GATTTGAGAAAAGAGTGGTTTCACAAGACCTACAACTTTGGCTCTCAAATgtgagttctg ... tcacacgcagACACCGCCTTCTGATGGGAAGTTTGTTCTTCTTGCCCGTGCTGGAAGAC
EST: gi|125211695|gb|EL226649.1|EL226649
EST:     AGACCTACAACTTTGGCTCTCAAAT                         ACACCGCCTTCTGATGGGAAGTTTGTTCTTCTTGCCCGTGCTGGAAGACAG
genomic: AGACCTACAACTTTGGCTCTCAAATgtgagttctg ... tcacacgcagACACCGCCTTCTGATGGGAAGTTTGTTCTTCTTGCCCGTGCTGGAAGACAG
EST: gi|125017443|gb|EL089712.1|EL089712
EST:     GATTTGAGAAAAGAGTGGTTTCACAAGACCTACAACTTTGGCTCTCAAAT                         ACACCGCCTTCTGATGG
genomic: GATTTGAGAAAAGAGTGGTTTCACAAGACCTACAACTTTGGCTCTCAAATgtgagttctg ... tcacacgcagACACCGCCTTCTGATGG