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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTATTGAGGAATCTGCTGGACTTAAAGGAGATGGCTCAGAAGTCGTGCTCGATCTTTTCTGTGGAACTGGTACCATAGGCCTTACACTTGCCAGAAGgtaaacaacatgagcgtaaagtactgtcaaagattaaaaataaaattgcagttgctgattgttcagtctgattcttctccctctag

Basic information

species Arabidopsis thaliana
transcript AT3G21300.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G21300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os01g09750.1 (Oryza sativa), 5'ss of exon 6
AGCTTATTGAGGAATCTGCTGGACTTAAAGGAGATGGCTCAGAAGTCGTGCTCGATCTTTTCTGTGGAACTGGTACCATAGGCCTTACACTTGCCAGAAGgtaaacaacatgagcgtaaa-gtactgtcaaagattaaaaataaaattgcagttgctgattgttcagtctgattcttctccctctag-----------------------------------------------------------------------------
||||||||| |||||||||||| ||||| ||||||||||| ||  |  | || ||  | ||||||||||| || ||||| || ||||| ||||| ||||||||||     | |   | |   | ||||   |||  |      |   ||      |   || ||   | || |||   ||     |                                                                              
AGCTTATTGGGGAATCTGCTGGGCTTAAGGGAGATGGCTCTGAGATTATCCTTGACTTGTTCTGTGGAACCGGAACCATTGGTCTTACCCTTGCTAGAAGgtaaattttctcactattatcatgctgttggagagcagttgctactatgtgaggccattttttttcatttgtttcaagtcttagcacaaaactttgagcattcgtcattcggttacccatttattgaaaagcatgattagtagatgttcttctgatttgaccag

upper sequence: AT3G21300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G115198_T01 (Zea mays), 5'ss of exon 6
AGCTTATTGAGGAATCTGCTGGACTTAAAGGAGATGGCTCAGAAGTCGTGCTCGATCTTTTCTGTGGAACTGGTACCATAGGCCTTACACTTGCCAGAAGgtaaacaacat--gagcgta-aagtactgtcaaaga-------ttaaaaataaaattgcagttgctga-ttgttcagtctgattcttctccctctag--------------------------------------------------
|||||||||| || |||||||| ||||||||||||||||| ||| | || || ||||| || ||||||||||| ||||| ||  | ||  ||||| |||||||       |    | ||| |  | | || | | |        |     | | | |  | |||||   ||| | |   | |  |   |  || |                                                    
AGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGATGGCTCTGAAATTGTTCTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAGgtagttttttttcaggtgtacatattccgtgagacagatatttctggttgtgagagtataattgctttcttggttaacataaacccattttctattacaatattttatggcaaccatttttagtaaacacttttctgcttggctcag