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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATGCGAGTTGGTGTTAATCTGGCTTTGGCCATCGCTTTACACAACATTCCCGAGgtagaaattctgtaaccattataaaagatacctagaaagaataacatgtcttatttttcttgcgtgtttcctgtttgactgtctattttccactataaactaatattaaagaggattaaacacctagattgttcatatttctgatttgacatgcttctcttgctgctccggtgtgatattttcag

Basic information

species Arabidopsis thaliana
transcript AT3G20870.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083065|gb|DR378824.1|DR378824
EST:     GAGTTGGTGTTAATCT-GCTTTGGCCATCGCTTTACACAACATTCCCGAG                         GGTGTTGCAGTTGCACTTCCTATTTATTTTGCAACAGAGAG
genomic: GAGTTGGTGTTAATCTGGCTTTGGCCATCGCTTTACACAACATTCCCGAGgtagaaattc ... atattttcagGGTGTTGCAGTTGCACTTCCTATTTATTTTGCAACAGAGAG
EST: gi|116403229|gb|EG445821.1|EG445821
EST:     GAATTGGTGTTAATCTGGCTTTGGCCATCGCTTTACACAACATTCCCGAG                         GGTGTTGCAGTTGCACTTCCTATTTATTTTGCAACAGAGAG
genomic: GAGTTGGTGTTAATCTGGCTTTGGCCATCGCTTTACACAACATTCCCGAGgtagaaattc ... atattttcagGGTGTTGCAGTTGCACTTCCTATTTATTTTGCAACAGAGAG
EST: gi|86082548|gb|DR378307.1|DR378307
EST:     TGTTAATCTGGCTTTGGCCATCGCTTTACACAACATT-CCGAG                         GGTGTTGCAGTTGCACTTCCTATTTATTTTGCAACAGAGAG
genomic: TGTTAATCTGGCTTTGGCCATCGCTTTACACAACATTCCCGAGgtagaaattc ... atattttcagGGTGTTGCAGTTGCACTTCCTATTTATTTTGCAACAGAGAG