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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATACATGGCACCTATTTCTCACCCTGACAGATACAGTCACAGTATTGATTTTTGGCGCAATGTTTATGGAATTGATAgtaagtattatatcaacttgaactttgggacaatcattgcattaaatttgattggtatactggtagaattgaaactgagttatatttcttgcaattttag...

Basic information

species Arabidopsis thaliana
transcript AT3G20020.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G20020.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G00220.1 (Glycine max), 5'ss of exon 8
TTATACATGGCACCTATTTCTCACCCTGACAGATACAGTCACAGTATTGATTTTTGGCGCAATGTTTATGGAATTGATAgtaagtattatatc----aacttgaactttgggacaatcattgcattaaatttgattggtatactggtagaattgaaactgagttatatttcttgcaattttag
|| |||||||| ||| |  ||||  | |||||||||||| ||||| |||| || ||||||||||||||||||||||||||| |||  | ||      ||||| ||        ||    ||    | | |    |||| | |||| |   |||   |   | | || | |     | |   | 
TTGTACATGGCTCCTGTCACTCATACGGACAGATACAGTGACAGTGTTGACTTCTGGCGCAATGTTTATGGAATTGATAgtgagttctctacttggtaacttaaatgacataccagatgttatgatgatt---gttggaa-actgtttatattcttaggaattgatgtctaggatagtagaat

upper sequence: AT3G20020.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA0048S00320.1 (Glycine max), 5'ss of exon 8
TTATACATGGCACCTATTTCTCACCCTGACAGATACAGTCACAGTATTGATTTTTGGCGCAATGTTTATGGAATTGATAgtaagtattatatcaacttgaactt---tgggacaatcattgcattaaatttgattggtatactggtagaattgaaactgagttatatttcttgcaattttag
|| |||||||| ||| |  | ||  | |||||||||||| ||||| |||| || ||||||||||||||||||||||| ||| |||  | ||     |  |||||   ||  | |     ||   | ||  |  |||| | |||| |   |||   |   | | ||   |     | |   | 
TTGTACATGGCTCCTGTCACACATACGGACAGATACAGTGACAGTGTTGACTTCTGGCGCAATGTTTATGGAATTGACAgtgagttctctacttggt--aacttagatgacataccagatgttatgaagattgttggaa-actgtttatattcttaggaattaatgcctaggatagtggaat

upper sequence: AT3G20020.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv10s0071g00750.t01 (Vitis vinifera), 5'ss of exon 8
TTATACATGGCACCTATTTCTCACCCTGACAGATACAGTCACAGTATTGATTTTTGGCGCAATGTTTATGGAATTGATAgtaagtattatatcaacttgaactttgggacaatcattgcattaaatttgattggtatactggtagaattgaaactgagt-tatatttcttgcaattttag-
|| |||||||||||| |  | ||| |||||||||||||  |||| |||||||| ||||||||||| ||||||||||||||||||||  | |||    | || |    ||   | ||    | ||| |   ||  |||          | |||  |||   |||| |  |   | || ||| 
TTGTACATGGCACCTGTCACACACACTGACAGATACAGAGACAGCATTGATTTCTGGCGCAATGTATATGGAATTGATAgtaagtac-acatcctagtaaattaaatgattct-atcatttgaaactatgtttatatgtgaaacatgtggaatatgatcatatagtgttcatatttctaga