1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TACGTTCATGCGGATGGTATGACAAGGTTCTCATCTCCATGCATGCCAAGAAGAGATTGCGTACAGAGCAATCAGGTGGAGAAGATGGTAGCGACTTGAAgtaagtgaagcacgaattattcctgttccctatgatcttctcatacattctcttcctcttacttgagtataatagctagaatctgcatatattgcatttggacctcttttggcttcatgcttcattataatcgtcatatttaaattcatgttttggatggttggacctttgtgcag
species | Arabidopsis thaliana |
transcript | AT3G14400.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGAGATTGCGTACAGAGCAATCAGGTGGAGAAGATGGTAGCGACTTGAA AAGGAGGCTGATTGAAGATGTGAAATCAAGTTTGAAATCACAGATTCCAGAEST: gi|116411700|gb|EG454292.1|EG454292
genomic: AAGAGATTGCGTACAGAGCAATCAGGTGGAGAAGATGGTAGCGACTTGAAgtaagtgaag ... ctttgtgcagAAGGAGGTTGATTGAAGATGTGAAATCAAGTTTGAAATCACAGATTCCAGA
EST: AAGAGATTGCGTACAGAGCAATCAGGTGGAGAAGATGGTAGCGACTTGAA AAGGAGGTTGATTGAAGATGTGAAATCAAGTTTGAAATCACAGATTCCAGAEST: gi|116412851|gb|EG455443.1|EG455443
genomic: AAGAGATTGCGTACAGAGCAATCAGGTGGAGAAGATGGTAGCGACTTGAAgtaagtgaag ... ctttgtgcagAAGGAGGTTGATTGAAGATGTGAAATCAAGTTTGAAATCACAGATTCCAGA
EST: AAGAGATTGCGTACAGAGCAATCAGGTGGAGAAGATGGTAGCGACTTGAA AAGGAGGTTGATTGAAGATGTGAAATCAAGTTTGAAATCACAGATTCCAGA
genomic: AAGAGATTGCGTACAGAGCAATCAGGTGGAGAAGATGGTAGCGACTTGAAgtaagtgaag ... ctttgtgcagAAGGAGGTTGATTGAAGATGTGAAATCAAGTTTGAAATCACAGATTCCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGTTCATGCGGATGGTATGACAAGGTTCTCATCTCCATGCATGCCAAGAAGAGATTGCGTACAGAGCAATCAGGTGGAGAAGATGGTAGCGACTTGAAgtaagtgaagcacgaattattcctgttccctatgatcttctcatacattctcttcctcttacttgagtataatagctagaatctgcatatattgcatttggacctcttttggcttcatgcttcattataatcgtcatatttaaattcatgttttggatggttggacctttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG