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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGAAGTTTCTGGAGCTCAGTTTCTCAAATCACGCAGCTGCTAGTAGAGTAGCTTGTTGTGGCCATTCTCTGCATAGAGATTGTCTTCGCTTCTATGGgtacttttttcttgcgtccactcctccttgggccaaatatgattaattgttaaaaattgtcttgtttaaaagtctgttttttcctaacaagttgtgcccgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G14270.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14270.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os08g34950.1 (Oryza sativa), 5'ss of exon 6
TTGGGAAGTTTCTGGAGCTCAGTTTCTCAAATCACGCAGCTGCTAGTAGAGTAGCTTGTTGTGGCCATTCTCTGCATAGAGATTGTCTTCGCTTCTATGGgtacttttttcttgcgtccactcctccttgggccaaatatgattaattgttaaaaattgtcttgtttaaaagtctgttttttcctaacaagttgtgcccgtgcag
|||| || |||||||| || || ||||||||||| || || |||||||| |||||  |||||||||||||||| || || ||||| ||||| || || |||||     |         |||||||| |     ||| |    | ||||| |||| | | |   | ||| | || ||| ||||                       
TTGGAAAATTTCTGGAACTTAGCTTCTCAAATCATGCGGCAGCTAGTAGGGTAGCCAGTTGTGGCCATTCTCTTCACAGGGATTGCCTTCGTTTTTACGGgtatcccct---------cactcctctt-----caatttcattaaattggtaaatactatg--gcttacatgtttgtattttag---------------------

upper sequence: AT3G14270.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA07G05100.1 (Glycine max), 5'ss of exon 7
TTGGGAAGTTTCTGGAGCTCAGTTTCTCAAATCACGCAGCTGCTAGTAGAGTAGCTTGTTGTGGCCATTCTCTGCATAGAGATTGTCTTCGCTTCTATGGgtacttttt-tcttgcgtccactcctccttgggccaaatatgattaattgttaaaaattgtcttgtttaaaagtctgttttttcctaacaagttgtgcccgtgcag
||||||||||| ||||||||||||||||||| ||||| || || || || || ||  | ||||| |||||| | || |||||||||||||| || |||||||| || |  |||| | |    |     |||  | ||| | |  |||| ||  ||  || |    | |    | || ||| |    ||   |   ||||  ||  |
TTGGGAAGTTTTTGGAGCTCAGTTTCTCAAACCACGCTGCAGCCAGCAGGGTGGCCAGCTGTGGTCATTCTTTACACAGAGATTGTCTTCGTTTTTATGGgtaattatagtcttccctgttttggggtttgaactaaacaag--taatggtccaaggtttttaaatgtt---gcctatttataatgaaactgccatgcc-atgtgg

upper sequence: AT3G14270.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G01590.1 (Glycine max), 5'ss of exon 8
TTGGGAAGTTTCTGGAGCTCAGTTTCTCAAATCACGCAGCTGCTAGTAGAGTAGCTTGTTGTGGCCATTCTCTGCATAGAGATTGTCTTCGCTTCTATGGgtacttttttcttgcgtccactcctccttgggccaaata--tgattaa---ttgttaaaaattgtcttgtttaaaagtctgttttttcctaacaagttgtgcccgtgcag
||||||| ||| ||||||||||||||||||| ||||| || || || || || ||  | ||||| || ||| | || |||||||| ||||| || |||||||| ||  | ||| | |    |     |||  ||||| |  || |  |   || |||||  ||| ||  |||| ||        |  | |  || || || |  |     
TTGGGAAATTTTTGGAGCTCAGTTTCTCAAACCACGCTGCAGCCAGCAGGGTGGCAAGCTGTGGTCACTCTTTACACAGAGATTGCCTTCGTTTTTATGGgtaattagt-cttccctatttttgggtttgaaccaaacaaatggtctaaggtttttaaatgttgcct-atttataa--tgaaactgccatggcatgtggt-cttg-----

upper sequence: AT3G14270.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv09s0002g00380.t01 (Vitis vinifera), 5'ss of exon 8
TTGGGAAGTTTCTGGAGCTCAGTTTCTCAAATCACGCAGCTGCTAGTAGAGTAGCTTGTTGTGGCCATTCTCTGCATAGAGATTGTCTTCGCTTCTATGGgtacttttttcttgcgtccactcctcct-tgggccaaatatgattaattgttaaaaattgtcttgtttaaaagtctgttttttcctaacaagttgtgcccgtgcag
||||||| ||| ||||||||||||| ||||| || |||||||| || || || ||| ||||||| ||||| || || |||||||||||||| ||||||||||| || ||  |  |    | | ||  |    |  ||| ||   |||   || |  ||| ||  |    |     |||||  | |  |  |  |||||        
TTGGGAAATTTTTGGAGCTCAGTTTTTCAAACCATGCAGCTGCAAGCAGGGTGGCTAGTTGTGGTCATTCCCTACACAGAGATTGTCTTCGGTTCTATGGgtatttcttcttctcccaaatttcttttacttgtaaaaaatacataaac-ttgagtattatcaag----agctcttgtttcctacagaggacctgtgcaaaaatg-