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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACACTTTAGATAACGAGCTGGAAGTAGTGGAAGGAATGAAGCTAGCCAGAGGTTACATTTCTCCTTATTTTATCACGGATGAGAAGACCCAGAAATGCgtgagtgaaatctatcgtgtttagtattgtgtgaaaaggaaagaaagggtattgaactacctgtgcttgtttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G13860.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13860.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA07G01190.1 (Glycine max), 5'ss of exon 6
TAACACTTTAGATAACGAGCTGGAAGTAGTGGAAGGAATGAAGCTAGCCAGAGGTTACATTTCTCCTTATTTTATCACGGATGAGAAGACCCAGAAATGCgtgagtgaaatctatcgtgtt--tagtattgtgt---------gaaaaggaaagaaagggtattgaactacctgtgcttgtttttcag------------
 |||||||| |||||  || ||||||| || |||||||||||| || ||||||| ||||| |||||||||||||| || ||| |||||||||||||||| || |||| |  ||||  | ||   ||||   |||         |     |||   |||   |   ||   ||| |   |   | |||             
GAACACTTTGGATAATAAGTTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGAAATGTgtaagtgcagactattcttttgtcagtaacatgtactccatccggtcttgaatataagcaaaaaaaatctcctctatcttagtctcaaatataagcaaat

upper sequence: AT3G13860.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G20560.2 (Glycine max), 5'ss of exon 5
TAACACTTTAGATAACGAGCTGGAAGTAGTGGAAGGAATGAAGCTAGCCAGAGGTTACATTTCTCCTTATTTTATCACGGATGAGAAGACCCAGAAATGCgtgagtga-aatctatcgtgt--ttagtattgtgtg--------aaaaggaaagaaagggtattgaactacctgtgcttgtttttcag------------
 |||||||| ||||| ||  ||||||| || |||||||||||| || ||||||| ||||| |||||||||||||| || ||| ||||||||| |||||| || || |   |  |||  | |  | | ||   | |                || | | |  |   ||   | | |   |   | |||             
GAACACTTTGGATAATGAATTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGATACATATCTCCTTATTTTATTACTGATCAGAAGACCCGGAAATGTgtaagcgctgacttattctttagtcactaacatatactccctccggttttgaatataagcaaaaaaatctcttctatcttggtctcaaatataagtaaat

upper sequence: AT3G13860.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv09s0002g02240.t01 (Vitis vinifera), 5'ss of exon 6
TAACACTTTAGATAACGAGCTGGAAGTAGTGGAAGGAATGAAGCTAGCCAGAGGTTACATTTCTCCTTATTTTATCACGGATGAGAAGACCCAGAAATGCgtgagtg-aaatctatcgtgtttagta-----ttgtgtg---aaaaggaaagaaagggtattgaactacctgtgcttgtttttcag--------------
 || ||||| || |  ||| | ||||| |||||||||||||||||||| ||||| || || |||||||||||| | || ||  | |||||||||||||| || |||  | |||| |  | || |  |     |||  |    ||||   || ||     ||||| |  |||||   ||                      
AAATACTTTGGACAGTGAGTTAGAAGTGGTGGAAGGAATGAAGCTAGCGAGAGGCTATATATCTCCTTATTTTGTTACTGACCACAAGACCCAGAAATGTgtaagttcagatctttatttttaaacacaaatttgcctatctaaaaaagaataataataattgatcaccctgtaactgaacaaagatgaggtctcccact