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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAACAAAACTTGGAGTGAGAAACATTGCATTCCTCGGTTCTGGACTTCTGCTAGTAAATTATGTTTCAGCCATATCACTAGCTTTCTACATGCCTCAGgtgaattcatctatttccgtcttaactatttcggttaattaaagcacgaacaccattactgcatgtagaagcttgataaactatcgccaccaatttatttttgttgcgatattgttactttcctcagtatgcagctttgaaaagaccaaccctcttatcctttaacaatgaacag

Basic information

species Arabidopsis thaliana
transcript AT3G11945.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11945.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv08s0007g07200.t01 (Vitis vinifera), 5'ss of exon 7
GGCAACAAAACTTGGAGTGAGAAACATTGCATTCCTCGGTTCTGGACTTCTGCTAGTAAATTATGTTTCAGCCATATCACTAGCTTTCTACATGCCTCAGgtgaattcatc-tatttccgtcttaactatttcggttaattaaagcacgaacaccattactgcatgtagaagcttgataaactatcgccaccaatttatttttgttgcgatattgttactttcctcagtatgca-gctttgaaaagaccaaccctcttatcctttaacaatgaacag
||||||||| ||||| || ||||||||||| || || |||||||||||| |||| ||||||||| ||    |||| |    |||  | || ||||||||||||||   ||| | ||| |    || ||  |||   |  |||         |    ||  |     ||  ||||  ||    |  |  |||  || |  ||  | | |   | | |||  | | ||||| |||| |||||| |                                  
GGCAACAAAGCTTGGTGTTAGAAACATTGCTTTTCTTGGTTCTGGACTTTTGCTGGTAAATTATATTGGTTCCATTTTGGCAGCAATTTATATGCCTCAGgtgaacatatcatctttgcagtctatcttcttcatct--tta---------cctggttggttttcatatgagctgtat---tttacttcactgatgtgattcagatcc--caatattaagtccttcagtttgcatgctttgcag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124819588|gb|EH904454.1|EH904454
EST:     CTTTCTACATGCCTCAG                         GTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGC
genomic: CTTTCTACATGCCTCAGgtgaattcat ... caatgaacagGTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGC
EST: gi|125203131|gb|EL218085.1|EL218085
EST:     CTTTCTACATGCCTCAG                         GTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGC
genomic: CTTTCTACATGCCTCAGgtgaattcat ... caatgaacagGTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGC
EST: gi|124911352|gb|EH985432.1|EH985432
EST:     TAGCTTTCTACATGCCTCAG                         GTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGC
genomic: TAGCTTTCTACATGCCTCAGgtgaattcat ... caatgaacagGTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGC