Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGACGAACTTGGGTCGATTCGCCTGGGGAAATGATCATGACAAATCAGACCACCGGTGACAAAGTCGTGCTTTACTTTCAACCATGTGGCTGGTTCGGgtaagtttttttcactgcaacctcatttcctgttatattttttccattcaaagctgaagaaatgtgcatttatggtctctacag

Basic information

species Arabidopsis thaliana
transcript AT3G09300.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 7
TTGGACGAACTTGGGTCGATTCGCCTGGGGAAATGATCATGACAAATCAGACCACCGGTGACAAAGTCGTGCTTTACTTTCAACCATGTGGCTGGTTCGGgtaagtttttttcactgcaacctcatttc----ctgttatattttttccattcaaagctgaagaaatgtgcatttatggtctctacag----------------------------------------------------------------------
|||| || |||||||| ||||| ||||| || ||| | |||||||| | ||| ||||| |||||||  ||| | || || || |||||||||||||||||||| | | |||   |  |||  |  | |      ||||   |||||    ||||   ||  | |  ||   | |  | |     |  |                                                                      
TTGGGCGTACTTGGGTTGATTCTCCTGGAGAGATGGTTATGACAAACCTGACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGGgtatgatatttggccatcaatttattcttgcatttgttgactttttcagtttcagtactatatatttgcttactatttgctggaagcgttggcagttattcaattctttttattgtcttatagttcgctcagtccggtttgtattgcttacatttcag

upper sequence: AT3G09300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S20_97V6.1 (Physcomitrella patens), 5'ss of exon 7
TTGGACGAACTTGGGTCGATTCGCCTGGGGAAATGATCATGACAAATCAGACCACCGGTGACAAAGTCGTGCTTTACTTTCAACCATGTGGCTGGTTCGGgtaa--gtttttttcactgcaacc----------tcatttcctgttat-attttttccattcaaagctgaagaaatgtgcatttatggtctctacag-------------------------------------------------------------------------
|||||||||||||||| ||||| || || || ||| ||||||||||||  || || || || ||||| |||||||||||||| ||||||   ||||||||||||  || ||  || |  | |||          |  ||| |  |||| ||||  |   |     | || |  | || |  | | | ||     ||                                                                          
TTGGACGAACTTGGGTAGATTCCCCAGGCGACATGGTCATGACAAATCTCACAACAGGGGAGAAAGTTGTGCTTTACTTTCATCCATGTAATTGGTTCGGgtaattgtcttcgtcgccaccaccctcgaagcgttttttttcccttatcatttcatttgtgtttcgatgcaacagtgcgactctttagtgcggtcaaatgtagttctgcagcatgtctctaaacatgctcctttttcttcaatgcgtaatgctcccggtccttaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164117816|gb|ES126203.1|ES126203
EST:     GGCTGGTTCGG                         ATCTGGTCGATATGAAGTGGATGGATATGTCTATAACGCCTCTGAGGAGCC
genomic: GGCTGGTTCGGgtaagttttt ... gtctctacagATCTGGTCGATATGAAGTGGATGGATATGTCTATAACGCCTCTGAGGAGCC