1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGGAAATGCTGAGGACATGGTTAAAAGGGACAAATCCGGCAAGCCTGCTCTCGATAAGGAAGGGAACCTTCAGATTCTTACCTCTCACACCCTTAAACCAgtaagttctagcactactaaaacagttcgtgttatgaccattgcaactgagcatagattaagcatgaggggttgtaataccagaagtggttggtgtatcttatatgaaatttggacatgatgtgtgtgtgcag
species | Arabidopsis thaliana |
transcript | AT3G08590.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCGATAAGGAAGGGAACCTTCAGATTCTTACCTCTCACACCCTTAAACCA GTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTCAGGTTTAGAEST: gi|125016810|gb|EL089079.1|EL089079
genomic: TCGATAAGGAAGGGAACCTTCAGATTCTTACCTCTCACACCCTTAAACCAgtaagttcta ... gtgtgtgcagGTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGA
EST: CTTACCTCTCACACCCTTAAACCA GTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGAEST: gi|124857480|gb|EH941917.1|EH941917
genomic: CTTACCTCTCACACCCTTAAACCAgtaagttcta ... gtgtgtgcagGTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGA
EST: CTCTCACACCCTTAAACCA GTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGAEST: gi|86084815|gb|DR380574.1|DR380574
genomic: CTCTCACACCCTTAAACCAgtaagttcta ... gtgtgtgcagGTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGA
EST: TCGATAAGGAAGGGAACCTTCAGATTCTTACCTCTCACACCCTTAAACCA GTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGA
genomic: TCGATAAGGAAGGGAACCTTCAGATTCTTACCTCTCACACCCTTAAACCAgtaagttcta ... gtgtgtgcagGTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAAATGCTGAGGACATGGTTAAAAGGGACAAATCCGGCAAGCCTGCTCTCGATAAGGAAGGGAACCTTCAGATTCTTACCTCTCACACCCTTAAACCAgtaagttctagcactactaaaacagttcgtgttatgaccattgcaactgagcatagattaagcatgaggggttgtaataccagaagtggttggtgtatcttatatgaaatttggacatgatgtgtgtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA