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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGCGCATCGAATCAAGAACGAGAATTCACTCCTTTCTAAAACCATGAGACTTTTTAGCACCAATTATCGGCTTCTTATCACGGGGACCCCCCTTCAGgtgtttgctctatcttattcttgaatatttggacattgaagttttctttgttaagttgcttctaattgaatgttgaaacaacctttcttgtacggctctgtttgcactcttaacttttgcttttccgggcacttttaatatttaccgtataatgactgtgtagcctgctgtactcatattgtcctcatatatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G06400.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06400.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 7
TGAAGCGCATCGAATCAAGAACGAGAATTCACTCCTTTCTAAAACCATGAGACTTTTTAGCACCAATTATCGGCTTCTTATCACGGGGACCCCCCTTCAGgtgtttgctctatcttattcttgaatatttggacattgaagttttctttgttaagttgcttctaattgaatgttgaaacaacctttcttgtacggctctgtttgcactcttaacttttgcttttccgggcacttttaatatttaccgtataatgactgtgtagcctgctgtactcatattgtcctcatatatgcag
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TGAAGCTCATCGAATCAAGAATGAGAATTCTCTTCTTTCAAAGACAATGAGACTATATAGTACGAACTACCGCCTTCTTATCACGGGTACACCACTTCAGgtactaattaaatataa-----aaaaacatatatatt-----tttcattggca--taggaatttgtcgaattttctgtca---ttccaaatctggtatgaggattacttttaaat---------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116481378|gb|EG523970.1|EG523970
EST:     GACTTTTTAGCACCAATTATCGGCTTCTTATCACGGGGACCCCCCTTCAG                         AATAATCTCCATGAACTGTGGGCTCTTCTAAATTTTCTTCTGCCTGAGATT
genomic: GACTTTTTAGCACCAATTATCGGCTTCTTATCACGGGGACCCCCCTTCAGgtgtttgctc ... atatatgcagAATAATCTCCATGAACTGTGGGCTCTTCTAAATTTTCTTCTGCCTGAGATT