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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGgtgagtgtctttatccattctaaggactaatcatactggtcttaaaaatcgttctcaaagaaacagtaacaaccatacctttctattttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G05530.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os02g56000.2 (Oryza sativa), 5'ss of exon 7
TGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGgtgagtgtctttatccatt-ctaaggactaatcat--actggtcttaaa--aatcgttctcaaagaaacagtaa--caaccatacctttctattttttcag
|||||| || || ||||| ||||||||| | || |||||||||||||| ||||| || || ||||||||||| || ||  | || ||||| ||  | |||||   || || | | || |  ||   |      ||||  | || || |||  |  |   | |     |   |  |   | |   |||| 
TGAAGTTAGTGGTGACAGAGAAGTGCAGCGCACAATGTTGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcatttttatttgtttcttaagtctgaatatttgcaaactgtaaaccattcattgtcatcgttatgatgatttggcacaaaatggttttgaattca-

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 5'ss of exon 7
TGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGgtgagtgtctttatccattctaaggactaat-catactggtct-----taaaaatcgttctcaaagaaacagtaacaaccatacctttctattttttcag
||| || || || ||||| ||||| ||||||||||||||||| ||||| || ||||| || ||||| ||||| || || || || ||||| ||  | | |    |||        |  | ||| | |   |     ||   ||  | |        |  ||       |   |||  | |||||| | 
TGAGGTTAGTGGTGACAGAGAAGTTCAGAGGACTATGTTGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAGgttaggatatattaatatttgtttctttgttgcatgccgacatgcatgtactgattatccctgccctgatggtttagttgagcacttgatcttttttgat

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 7
TGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGgtgagtgtctttatccattctaaggactaatcatactggtct------taaaaatcgttctcaaagaaacagtaacaaccatacctttctattttttcag-
|||||| || ||||||||||| || ||| | || ||||| || ||||||||||| ||||| || || ||||| ||||| || ||||||||  |    | ||| | |      | ||  |  | ||| |        |||| |  |  || ||| | |   | ||   | |       |||   | ||  
TGAAGTAAGTGGAGACAGGGAGGTACAGCGAACAATGTTAGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGGATTAAGgtttg-acttctattcttatctgtgtctcttttttctgattgatgtgataaacagtgagcttaaaaagatgtttactgtctttgggggttatgcatacata

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S340_7V6.1 (Physcomitrella patens), 5'ss of exon 7
TGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGgtgag--------tgtctttatccattctaaggactaatcatactggtcttaaaaat-cgttctcaaagaaacagtaacaaccatacctttctattttttcag--------------------------------------------------------------------
|||||| || |||||  | ||||||||||| |||||| |||||||||| ||||| || || |||||||| || ||||| || ||||| |||||        | || ||||   ||||     ||   |||| || | |   |||| |  | | |           | || ||  |     |    |   ||                                                                    
TGAAGTAAGTGGAGATCGTGAAGTGCAGAGAACTATGCTGGAGTTGCTTAATCAGCTGGATGGATTCAGCAGTGATGAGCGCATTAAAgtgagccttgaaatatcattattatttctccattcttcacataatgatttctcaaatgctctattatttgcttgtctataatcagtcaaggttgaagtcctagtcgtgggtgtagccgtgcgggctgaggaggaaattttaggaactaattcttgaatgtttcatgaacag