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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCAAAACAGAAGCTTCTCTGTTGCGTATGCTCAAGGGCTCTCCTGATGTTTACTTGAGTGGTCCTATCAAACAATATATCACAGATAGAGGTGGCAGgtgtgtatctgctataactacaagaactgattctcgcatttattatgtcattggcttatcgggtatttataatattgtcttcaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G04870.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04870.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 7
CTACCAAAACAGAAGCTTCTCTGTTGCGTATGCTCAAGGGCTCTCCTGATGTTTACTTGAGTGGTCCTATCAAACAATATATCACAGATAGAGGTGGCAGgtgtgtatctgc-tataactacaagaactgattctcgcatttattatgtcattggcttatcgg--gtatttataatattgtcttcaaacag-------------
| || || ||||||||||| ||  |||| ||||| || || ||||| ||||| ||||||||||| || |||| ||| ||||||||||||| ||| |||||||  | |  ||  | |    ||   || |||   |    |  |||||   |||   |||| ||  ||     | |  ||    ||||   |             
CCACTAAGACAGAAGCTTCCCTACTGCGCATGCTTAAAGGTTCTCCAGATGTATACTTGAGTGGCCCCATCAGACAGTATATCACAGATAAAGGGGGCAGgtacgaacgtgaatgtggaaactttaaatgaacatgatgtg-attat---atttcattattggttgtgcccttgaggtttggctcaagtggtaaagggatgggg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86024807|gb|DR320560.1|DR320560
EST:     GTTTACTTGAGTGGNCCTATCAAACAATATATNACAGATAGAGGTGGCAN                         AATCCATCTAAGGTGGGGTTGCAGGGAGATACT
genomic: GTTTACTTGAGTGGTCCTATCAAACAATATATCACAGATAGAGGTGGCAGgtgtgtatct ... cttcaaacagAATCCATCTAAGGTGGGGTTGCAGGGAGATACT