1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGAAAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGgttctctttcgttttcgaaaagttaatgttctggtaaaatttccatgataactcgggagagatatgaaagaatcagattctcgatatcgacatgattaac...
species | Arabidopsis thaliana |
transcript | AT3G02460.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAG GTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCCEST: gi|19742875|gb|AU228228.1|AU228228
genomic: AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGgttctctttc ... ttcatggcagGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
EST: AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATC-AG GTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCCEST: gi|124857581|gb|EH942018.1|EH942018
genomic: AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGgttctctttc ... ttcatggcagGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
EST: CCATTGGCTTACTCTATCAAG GTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGA
genomic: CCATTGGCTTACTCTATCAAGgttctctttc ... ttcatggcagGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGAAAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGgttctctttcgttttcgaaaagttaatgttctggtaaaatttccatgataactcgggagagatatgaaagaatcagattctcgatatcgacatgattaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagaat