1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTGAGAGAGACAATGTTCTTAATCAATTCCGCAGTGGCAGAACTCCGGTTCTTGTAGCAACCGATGTTGCTGCTCGTGGTCTGGACGTTAAGGACATCAGgtatttatataatccaaatcctcccagtcctgtaaaacaaatgattaaattatgtgacttgatgattatattagctaatacgatttgagatcacag
species | Arabidopsis thaliana |
transcript | AT3G01540.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTGTAGCAACCGATGTTGCTGCTCGTGGTCTGGACGTTAAGGACATCAG GGCGGTCGTAAACTATGATTTCCCCAATGGAGTGGAAGACTATGTTCATAGEST: gi|11118348|gb|AB050574.1|AB050574
genomic: CTTGTAGCAACCGATGTTGCTGCTCGTGGTCTGGACGTTAAGGACATCAGgtatttatat ... gagatcacagGGCGGTCGTAAACTATGATTTCCCCAATGGAGTGGAAGACTATGTTCATAG
EST: CTTGTAGCAACCGATGTTGCTGCTCGTGGTCTGGACGTTAAGGACATCAG GGCGGTCGTAAACTATGATTTCCCCAATGGAGTGGAAGACTATGTTCATAGEST: gi|125029854|gb|EL102123.1|EL102123
genomic: CTTGTAGCAACCGATGTTGCTGCTCGTGGTCTGGACGTTAAGGACATCAGgtatttatat ... gagatcacagGGCGGTCGTAAACTATGATTTCCCCAATGGAGTGGAAGACTATGTTCATAG
EST: CCGATGTTGCTGCTCGTGGTCTGGACGTTAAGGACATCAG GGCGGTCGTAAACTATGATTTCCCCAATGGAGTGGAAGACTATGTTCATAG
genomic: CCGATGTTGCTGCTCGTGGTCTGGACGTTAAGGACATCAGgtatttatat ... gagatcacagGGCGGTCGTAAACTATGATTTCCCCAATGGAGTGGAAGACTATGTTCATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAGAGAGACAATGTTCTTAATCAATTCCGCAGTGGCAGAACTCCGGTTCTTGTAGCAACCGATGTTGCTGCTCGTGGTCTGGACGTTAAGGACATCAGgtatttatataatccaaatcctcccagtcctgtaaaacaaatgattaaattatgtgacttgatgattatattagctaatacgatttgagatcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT