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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTTTCTGCATATGGAACTGTCCAGAAGATTGCTATATTTGAGAAGAATGGTTCAACGCAAGCATTAATTCAATACTCTGgtacatccgactgctgatctgcactaatgtttgattgtgacccgattcaaccgttttataaattctgaacatttatttgttactgtacaatcatcttcagtttcgtgctttctatttcgtctctgtag

Basic information

species Arabidopsis thaliana
transcript AT3G01150.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01150.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 8
GTGTTTTCTGCATATGGAACTGTCCAGAAGATTGCTATATTTGAGAAGAATGGTTCAACGCAAGCATTAATTCAATACTCTGgtacat-ccgactgctgatctgcactaatgtttgattgtgacccgattcaaccgttttataaattctgaa--catttatttgttactgtacaatcatcttcagtttcgtgctttctatttcgtctctgtag
||||| ||||| | ||| ||||| || |||||||| || |||||||||||||||  || ||| || |||||||||||  | ||||  | || |||      | || |  | | ||  |||   |  | ||     | | || | |  |||||  || ||   ||| | | |    ||||                                  
GTGTTCTCTGCTTTTGGTACTGTTCAAAAGATTGCAATGTTTGAGAAGAATGGTGGAATGCAGGCCTTAATTCAATATCCAGgtattttccaactagcatgcagctcacaggattttttgcaccttgttttgttggatgtacataacctgaatgcacttgggtgtga-tatttgttcattcat------------------------------

upper sequence: AT3G01150.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os03g25980.1 (Oryza sativa), 5'ss of exon 8
GTGTTTTCTGCATATGGAACTGTCCAGAAGATTGCTATATTTGAGAAGAATGGTTCAACGCAAGCATTAATTCAATACTCTGgtacatccgactgctgatctgcactaatgtttgattgtgacccgattcaaccgttttataaattctgaacatttatttgttactgtacaatcatcttcagtttcgtgctttctatttcgtctctgtag
||||| ||||||| ||| || |||||||| || ||||| ||||||||||| |||  ||| ||||| || ||||| ||| ||||||    |    |   || |   || | ||   |||        |||      | |  | ||||  |  | || |||| | |   |   | | |         |                        
GTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGgtatgaaccttggaacatatcatctta-gtagaattacagaataattatgttttgtgttgaatta-gtgctttcattt-tcaacatttgacc-tagcagaccac------------------------

upper sequence: AT3G01150.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv14s0108g01030.t01 (Vitis vinifera), 5'ss of exon 8
GTGTTTTCTGCATATGGAACTGTCCAGAAGATTGCTATATTTGAGAAGAATGGTTCAACGCAAGCATTAATTCAATACTCTGgtacatccgactgctgatctgcactaatgtttgattgtgacccgattcaaccgttttataaattctgaacatttatttgttactgtacaatcatcttcagtttcgtgctttctatttcgtctctgtag--
|| || ||||||| ||| ||||||||||| ||||| ||||||||||||||||||   | ||| ||  ||||||||||  ||||||  |||         |||   |  ||||| |  | |         | ||||||| || | ||| | |||| | ||||||          ||| |||| | || || ||   | |  ||  ||||    
GTATTCTCTGCATTTGGTACTGTCCAGAAAATTGCCATATTTGAGAAGAATGGTGGGATGCAGGCTCTAATTCAATATCCTGgtagttcc---------tctatccctatgttaggctat---------ctaccgttt-atcatttcaggacatct-tttgtt----------cattttcattatcctgattctaaatcagtggctgtttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075312|gb|DR371069.1|DR371069
EST:     TGCTATATTTGAGAAGAATGGTTCAACGCAAGCATTAATTCAATACTCTG                         ATATACCAACAGCAGCAATGGCCAAAGAAGCACTGGAAGGACACTGCATTT
genomic: TGCTATATTTGAGAAGAATGGTTCAACGCAAGCATTAATTCAATACTCTGgtacatccga ... gtctctgtagATATACCAACAGCAGCAATGGCCAAAGAAGCACTGGAAGGACACTGCATTT