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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGACCTCGAGGATATGGACTTTATCATGTCCACGAGTGAAAATAACTTGGCAGAGCGGCTTCTTCCTCCAAAATATTCATTTTTTATTCGAGAATCAAGgtattctatatagatttttgtttagtttcttcctactgggagctgttgtggttttaacatagtatatcagtttttcaagggaaattttagtttttctgtt...

Basic information

species Arabidopsis thaliana
transcript AT2G48060.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116402648|gb|EG445240.1|EG445240
EST:     GCAGAGCGGCTTCTTCCTC-AAAATATTCATTTTTTATTCGAGAATCAAG                         GGCCGGTGTCAGGCACACCAATGTTTTACTGAGGGGAGCTGTGGTTAAGAC
genomic: GCAGAGCGGCTTCTTCCTCCAAAATATTCATTTTTTATTCGAGAATCAAGgtattctata ... aaattttcagGGCCGGTGTCAGGCACACCAATGTTTTACTGAGGGGAGCTGTGTTTAAGAC
EST: gi|116402577|gb|EG445169.1|EG445169
EST:     GCAGAGCGGCTTCTTCCTCCAAAATATTCATTTTTTATTCGAGAATCAAG                         GGCCGGTGTCAGGCACACCAATGT
genomic: GCAGAGCGGCTTCTTCCTCCAAAATATTCATTTTTTATTCGAGAATCAAGgtattctata ... aaattttcagGGCCGGTGTCAGGCACACCAATGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGACCTCGAGGATATGGACTTTATCATGTCCACGAGTGAAAATAACTTGGCAGAGCGGCTTCTTCCTCCAAAATATTCATTTTTTATTCGAGAATCAAGgtattctatatagatttttgtttagtttcttcctactgggagctgttgtggttttaacatagtatatcagtttttcaagggaaattttagtttttctgtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagggaaa