1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTAAGGAACAACAAGCTGATATATCAAGACAAGCCTAGGCTCAAAACCGCACTTGAGATGCTTAGGACAAGCATGAACCTAGAAGACACTCTCCACGAGgttcatgtctcttattgattgttcttgatcccgtgttatgacattatttctgaccaagacaacatgatattgcag
species | Arabidopsis thaliana |
transcript | AT2G47630.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CACTTGAGATGCTTAGGACAAGCATGAACCTAGAAGACACTCTCCACGAG ATAACAATGCCATTCTTTGTATTACACGGAGAAGCAGATACAGTGACGGATEST: gi|86040705|gb|DR336460.1|DR336460
genomic: CACTTGAGATGCTTAGGACAAGCATGAACCTAGAAGACACTCTCCACGAGgttcatgtct ... gatattgcagATAACAATGCCATTCTTTGTATTACACGGAGAAGCAGATACAGTGACGGAT
EST: CACTTGAGATGCTTAGGACAAGCATGAACCTAGAAGACACTCTCCACGAG ATAACAATGCCATTCTTTGEST: gi|86079379|gb|DR375136.1|DR375136
genomic: CACTTGAGATGCTTAGGACAAGCATGAACCTAGAAGACACTCTCCACGAGgttcatgtct ... gatattgcagATAACAATGCCATTCTTTG
EST: CACTTGAGATGCTTAGKACAAGCATGAACCTAGAAGACACTCTCCACGAG ATAACAATGCCATTCTTTGTATTACACGGAGAAGCAGATACAGTGACGGATEST: gi|124910592|gb|EH984672.1|EH984672
genomic: CACTTGAGATGCTTAGGACAAGCATGAACCTAGAAGACACTCTCCACGAGgttcatgtct ... gatattgcagATAACAATGCCATTCTTTGTATTACACGGAGAAGCAGATACAGTGACGGAT
EST: CACATGAGATGCTTAGGACAAGCATGAACCTAGAAGACACTCTCCACGAG ATAACAATGCCATTCTTTGTATTACACEST: gi|164222737|gb|ES033770.1|ES033770
genomic: CACTTGAGATGCTTAGGACAAGCATGAACCTAGAAGACACTCTCCACGAGgttcatgtct ... gatattgcagATAACAATGCCATTCTTTGTATTACAC
EST: CATGAACCTAGAAGACACTCTCCACGAG ATAACAATGCCATTCTTTGTATTACACGGAGAAGCAGATACAGTGACGGAT
genomic: CATGAACCTAGAAGACACTCTCCACGAGgttcatgtct ... gatattgcagATAACAATGCCATTCTTTGTATTACACGGAGAAGCAGATACAGTGACGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAGGAACAACAAGCTGATATATCAAGACAAGCCTAGGCTCAAAACCGCACTTGAGATGCTTAGGACAAGCATGAACCTAGAAGACACTCTCCACGAGgttcatgtctcttattgattgttcttgatcccgtgttatgacattatttctgaccaagacaacatgatattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG