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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAAACATCCGACCAAAGATGGTAGCTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGATgtgagtagaatcaaaatgtggattataacaatttcttaaatccattttttgagtcactgagtctaatcaaattgttatgacttag

Basic information

species Arabidopsis thaliana
transcript AT2G45790.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G45790.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA09G39800.1 (Glycine max), 5'ss of exon 9
GTTCAAAACATCCGACCAAAGATGGTAGCTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGATgtgagtag-aatcaaaatgtggattataacaatttcttaaatccattttttgagtca-ctgagtctaatcaaattgttatgacttag
||||| ||||| || ||||| |||||  ||| ||||||||||  |||||| ||||||||| | || ||||| ||||| ||||||||||| || ||||| ||||  |||    ||| | || ||   | |   || | |     |  | ||||| | ||   ||||  || | | |   |  ||
GTTCACAACATACGCCCAAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCTCATCTTAACTTGACATTCTCCATTGGAGGACAGATAAGTTTTGATgtaagtaataattttcatg-gcatgatg-tagtgattttatttttggtgataagtcaacagatcttaatttaaatat-actccccag

upper sequence: AT2G45790.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA18G46390.1 (Glycine max), 5'ss of exon 9
-GTTCAAAACATCCGACCAAAGATGGTAGCTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGATgtgagtagaa----tcaaaatgtgg-attataacaatttcttaaatccattttttgagtcactgagtctaatcaaattgttatgacttag
 ||||| || || || || || |||||  ||| ||||||||||  |||||| ||||||||| | || ||||| ||||| ||||||||||| || ||||| ||||       |||  |  ||   |  | |   | | ||  ||  | |  | |    || |   |||||  || | | |   |  | 
GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCTCATCTTAACTTGACATTCTCCATTGGAGGACAGATAAGTTTTGAtgtaagtaatgattttcatgacatgatgtggtgattttatttttgataaagtgatagttcaacaggtcctaatttaaatat-actccaca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074350|gb|DR370107.1|DR370107
EST:     TTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGAT                         GTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAC
genomic: TTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGATgtgagtagaa ... tatgacttagGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAC
EST: gi|125079479|gb|EL141471.1|EL141471
EST:     TTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGAT                         GTCTTCC-TAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAC
genomic: TTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGATgtgagtagaa ... tatgacttagGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAC
EST: gi|164195032|gb|ES128728.1|ES128728
EST:     CCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGAT                         GTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAC
genomic: CCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGATgtgagtagaa ... tatgacttagGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAC