1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CACAATATTCTGGTGCTAGAATTGAGGGAGAGGAAGTTACCTTAGATTTTGTGAAAACGATGATGGAGGATTTTAAGAACCAAAAAACATTGCATAAACGgtatgtattgttttgggggtactcaacttaatttacacagttaccatatgttcatgctttgcgggcactttatatgtag
species | Arabidopsis thaliana |
transcript | AT2G42810.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAAACATTGCATAAACG GTATGCCTATCAAATCGTCTTACAGACTAGGCAAATCTTGCTAGCAACTGCEST: gi|164039481|gb|ES174791.1|ES174791
genomic: AAAACATTGCATAAACGgtatgtattg ... ttatatgtagGTATGCCTATCAAATCGTCTTACAGACTAGGCAAATCTTGCTAGCA-CTGC
EST: GTGAAAACGATGATGGAGGATTTTAAGAACCAAAAAACATTGCATAAACG GTATGCCTATCAAATCG
genomic: GTGAAAACGATGATGGAGGATTTTAAGAACCAAAAAACATTGCATAAACGgtatgtattg ... ttatatgtagGTATGCCTATCAAATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAATATTCTGGTGCTAGAATTGAGGGAGAGGAAGTTACCTTAGATTTTGTGAAAACGATGATGGAGGATTTTAAGAACCAAAAAACATTGCATAAACGgtatgtattgttttgggggtactcaacttaatttacacagttaccatatgttcatgctttgcgggcactttatatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC