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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCATTTTGGGTCCTCTTTGGTGGTTTTGCTCCAATCGGAAGGAAAGTTGCCAATGATGATGACATTGTCCCGGAGTCAACTCCACCTAAGCTTTATTGgtctgttaatttctaattttgtcttcttgatataatgcatgccatcctgatacttatatcttctgcagtagtacctattttaaaatttacttaatagattattatgatagagttattgattgatatgttgttgctgtttaactttag

Basic information

species Arabidopsis thaliana
transcript AT2G41740.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G21350.2 (Glycine max), 5'ss of exon 6
GTGCATTTTGGGTCCTCTTTGGTGGTTTTGCTCCAATCGGAAGGAAAGTTGCCAATGATGATGACATTGTCCCGGAGTCAACTCCACCTAAGCTTTATTGgtctgttaatttctaattttgtcttcttgatataatgcatgccatcctgatacttatatcttctgcagtagtacctattttaaaatttacttaatagattattatgatagagttattgattgatatgttgttgctgtttaactttag
||| |||||||||||||||||||||||||||||| || || | ||| ||   || ||| ||||| ||| | || ||| ||| |||  || |||||||  ||| | ||  ||||       ||  || | |   | | | | ||  ||   | | ||| |   ||| || | |   | |||| |||         |    ||| || | |||||  ||| |                           
GTGAATTTTGGGTCCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTAATCAGTGAGGATGATATTATTCCAGAGACAATTCCTGCTCAGCTTTACAGgtatcttggtttc-------gtggtcctta---agtcccttcc--cccactccatattttacctgaagcatt-tttgttttgaaac------ggtga--tataattagagagtctttggtc--------------------------

upper sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G32100.1 (Glycine max), 5'ss of exon 5
GTGCATTTTGGGTCCTCTTTGGTGGTTTTGCTCCAATCGGAAGGAAAGTTGCCAATGATGATGACATTGTCCCGGAGTCAACTCCACCTAAGCTTTATTGgtctgttaatttctaattttgtcttcttgatataatgcatgccatcctgatacttatatcttctgcagtagtacctattttaaaatttacttaatagattattatgatagagttattgattgatatgttgttgctgtttaactttag
|||  ||||||||||||||||||||||||||||| || || | ||| ||    | ||| ||||| ||| | || ||| ||| |||  || |||||||| ||| ||||  ||||       ||  || | |  |        |||  |  | | || || ||      | ||||||| |||| |||   | || ||| | |       ||||||  ||| |   |                       
GTGAGTTTTGGGTCCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTAATTAGTGAGGATGATATTATTCCAGAGACAATTCCTGCTCAGCTTTATAGgtatgttggtttc-------gtgctcctcaagtcccttcccccactcc-acattt-tacct------gaagtacctgttttgaaa---agttgatataat-------tagagtctttggtcattt----------------------

upper sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G32010.1 (Glycine max), 5'ss of exon 7
GTGCATTTTGGGTCCTCTTTGGTGGTTTTGCTCCAATCGGAAGGAAAGTTGCCAATGATGATGACATTGTCCCGGAGTCAACTCCACCTAAGCTTTATTGgtctgttaatttctaattttgtcttcttgatataatgcatgccatcctgatacttatatcttctgcagtagtacctattttaaaatttacttaatagattattatgatagagttattgattgatatgttgttgctgtttaactttag
||| ||||||||| |||||||||||||||||||| || || | ||| ||    | ||| ||||| || || || ||| | | |||  || | || ||| ||| |       |  |  || ||  |    |   |||  |     |   || |  | ||| |  | || |  ||| ||| ||| | ||||   ||  |  |||                                             
GTGAATTTTGGGTTCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTAATTAGTGAGGATGATATCGTTCCAGAGACCATTCCTGCTCAACTCTATAGgtatagctccataaatcttcgtgattgcaactcaataaaatgagta--gaaaactgtatatgat-caattatacttatcttacattttaa--aaagggatatagg------------------------------------------

upper sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G29280.1 (Glycine max), 5'ss of exon 6
GTGCATTTTGGGTCCTCTTTGGTGGTTTTGCTCCAATCGGAAGGAAAGTTGCCAATGATGATGACATTGTCCCGGAGTCAACTCCACCTAAGCTTTATTGgtctgttaatttctaattttgtcttcttgatataatgcatgccatcctgatacttatatcttctgcagtagtacctattttaaaatttacttaatagattattatgatagagttattgattgatatgttgttgctgtttaactttag
||| ||||||||| |||||||||||||||||||| || || | |||  |    | ||| ||||| ||||| || ||| | | |||  || | || ||| ||| |     |   ||| | | | |  |||  ||     |         || |  | ||| |  | || |  ||| ||| ||| | ||||   ||  |  |||                                             
GTGAATTTTGGGTTCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGATAATTAGTGAGGATGATATTGTTCCAGAGACCATTCCTGCTCAACTCTATAGgtatagc--tccataaatctatttgattgcaattcaataaaatgagtagaaaactgtatatgat-caattatacttatcttacattttaa--aaagggatataga------------------------------------------