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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACAGTCTTCGCCGGAATGACTATGGCAGTTGTTGGTATTCTGGGTCACTTCAGgtatacttccaaacccacttatcttctctgaggcacaggcacttcactaatacatggaaactaccaactcttagattgatcatttgcatcatatatccagctactgtatgaccatgcaactgattcccatgccatctttctgtattgaaattttgcttctgcag

Basic information

species Arabidopsis thaliana
transcript AT2G41490.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G41490.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv08s0007g05920.t01 (Vitis vinifera), 5'ss of exon 7
GTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACAGTCTTCGCCGGAATGACTATGGCAGTTGTTGGTATTCTGGGTCACTTCAGgtatacttccaaacccacttatcttctctgaggcacaggcacttcact--aatacatggaaactaccaactcttagattgatcatttgcatcatatatccagctactgtatgaccatgcaactgattcccatgccatctttctgtattgaaattttgcttctgcag
||||||||||||||||||||||||||||||||||||    || || |||||||| ||||| || ||||| ||| | || || || ||||||  |     |      ||| || |     |  || |   || | |  ||||||    | || |||      || |||||     || | |  ||    | |                                                              
GTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACGTATTTTGCTGGAATGACAATGGCTGTAGTTGGCATTTTAGGCCATTTTAGgtatgttctgtcatgtttctattttatgattagttcaaggtgttaagtgtaatacagatgatctgccag-----agcttgattggcagccttaagtaataggttg-------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083719|gb|DR379478.1|DR379478
EST:     GTCTTCGCCGGAATGACTATGGCAGTTGTTGGTATTCTGGGTCACTTCAG                         TGAAACCCTCCTCATCTTCTTTCTTCCTCAAGTTCTGAACTTTCTATTATC
genomic: GTCTTCGCCGGAATGACTATGGCAGTTGTTGGTATTCTGGGTCACTTCAGgtatacttcc ... gcttctgcagTGAAACCCTCCTCATCTTCTTTCTTCCTCAAGTTCTGAACTTTCTATTATC
EST: gi|116441309|gb|EG483901.1|EG483901
EST:     TCGCTGGAACGACTGTGGCAGTTGTTGGTATTCTGGGTCACTTCAG                         TGAAACCCTCCTCATCTTCTTTCTTCCTCAAGTTCTGAACTTTCTATTATC
genomic: TCGCCGGAATGACTATGGCAGTTGTTGGTATTCTGGGTCACTTCAGgtatacttcc ... gcttctgcagTGAAACCCTCCTCATCTTCTTTCTTCCTCAAGTTCTGAACTTTCTATTATC