Sequence
atgc intronic sequence ATGC exonic sequenceATGGGCTCCTGGGCGGACACCAATTGCACCTCGTCCATTCAAAGCTAAACTTGCTCGCTTTGCTCCTCAATTTAGTGGGTACAATCAACATGATTCGCAGgtttgtgagactagccagatattttctttaacctgaatttacattgtagctcaaggaattcgagtttttcattttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G40930.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G40930.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G27790.1 (Glycine max), 5'ss of exon 7
ATGGGCTCCTGGGCGGACACCAATTGCACCTCGTCCATTCAAAGCTAAACTTGCTCGCTTTGCTCCTCAATTTAGTGGGTACAATCAACATGATTCGCAGgtttgtgagactagccagatattttctttaacctgaatttacattgtagctcaagga---attcgagtt-tttcattttgcag
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ATGGGCACCTGGGCGAACACCAATTGCTCCTCGGCCTTTTAAAGCAAAGCTTGTTCGCTTTGCACCTCAGTTCAGTGGGCACAATCAACATGATTCTCAGgttcacctgttgactgaaagttttaccctcttcaatttctatggtgtagtctgtggtaacatttgttttgttatctttttcag
upper sequence: AT2G40930.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G30650.1 (Glycine max), 5'ss of exon 7
ATGGGCTCCTGGGCGGACACCAATTGCACCTCGTCCATTCAAAGCTAAACTTGCTCGCTTTGCTCCTCAATTTAGTGGGTACAATCAACATGATTCGCAGgtttgtgagactagccagatattttctttaacctgaatttacattgtagctcaagg-aattcgagtttttc---attttgcag
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ATGGGCACCTGGGCGAACACCAATCGCTCCTCGGCCTTTTAAAGCAAAGCTTGTTCGCTTTGCACCTCAGTTCAGTGGGCACAATCAACATGATTCTCAGgttcacccattgactgaaagttttaccctcttcaatttctatgtcgtagtccgtggtaacatttgttttaccatctttttcag
upper sequence: AT2G40930.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv00s0174g00150.t01 (Vitis vinifera), 5'ss of exon 7
ATGGGCTCCTGGGCGGACACCAATTGCACCTCGTCCATTCAAAGCTAAACTTGCTCGCTTTGCTCCTCAATTTAGTGGGTACAATCAACATGATTCGCAGgtttgtgagactagccagatat---tttctttaacctgaatttacat----tgtagctcaaggaattcga-gtttttcattttgcag-----------
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GTGGGCACCAGGACGAACACCAGTTGCTCCTCGGCCATTCAAAACAAAGCTTGCTCGCTTTGCACCACAATTCAGTGGATATAATCAGCATGATTCACAGgttttttactttgcataaacctccattcattctatcagatcatgtatgatgtgcagttttatcattcaaatggttattatttatttattttcgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116470354|gb|EG512946.1|EG512946EST: TTGCTCGCTTTGCTCCTCAATTTAGTGGGTACAATCAACATGATTCGCAG GAGCTTTTAGCGTTTCTGCTGGATGGTCTTCACGAGGACCTAAATCGTGTT
genomic: TTGCTCGCTTTGCTCCTCAATTTAGTGGGTACAATCAACATGATTCGCAGgtttgtgaga ... cattttgcagGAGCTTTTAGCGTTTCTGCTGGATGGTCTTCACGAGGACCTAAATCGTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGGCTCCTGGGCGGACACCAATTGCACCTCGTCCATTCAAAGCTAAACTTGCTCGCTTTGCTCCTCAATTTAGTGGGTACAATCAACATGATTCGCAGgtttgtgagactagccagatattttctttaacctgaatttacattgtagctcaaggaattcgagtttttcattttgcag
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