1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AACCAGAACCAGCTAAGAAAGAGGCAGAGCTTAGTGTCAGTTTGCTTAACATTCAGGTTGGTCTAATTCGTAAAGCATGGAAGCACCCATCGGCGGATAGgtttgtggtcaaaaacatttcacttttatggctctgttaaagatttcactgaacatctgctaatttgttgaaatacttttcttatgtattgacaatgcag
species | Arabidopsis thaliana |
transcript | AT2G40660.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATTCAGGTTGGTCTAATTCGTAAAGCATGGAAGCACCCATCGGCGGATAG TTTGCTGGTGGAAGAAATAGATGTCGGGGAGGATAAAGTGAGACAAGTAGTEST: gi|164225921|gb|EL983465.1|EL983465
genomic: ATTCAGGTTGGTCTAATTCGTAAAGCATGGAAGCACCCATCGGCGGATAGgtttgtggtc ... gacaatgcagTTTGCTGGTGGAAGAAATAGATGTCGGGGAGGATAAAGTGAGACAAGTAGT
EST: GGAAGCACCCATCGGCGGATAG TTTGCTGGTGGAAGAAATAGATGTCGGGGAGGATAAAGTGAGACAAGTAGTEST: gi|124737145|gb|EH828547.1|EH828547
genomic: GGAAGCACCCATCGGCGGATAGgtttgtggtc ... gacaatgcagTTTGCTGGTGGAAGAAATAGATGTCGGGGAGGATAAAGTGAGACAAGTAGT
EST: ATTCAGGTTGGTCTAATTCGTAAAGCATGGAAGCACCCATCGGCGGATAG TTTGCTGGTGGAAGAAATAGATGTCGGGGAGG
genomic: ATTCAGGTTGGTCTAATTCGTAAAGCATGGAAGCACCCATCGGCGGATAGgtttgtggtc ... gacaatgcagTTTGCTGGTGGAAGAAATAGATGTCGGGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCAGAACCAGCTAAGAAAGAGGCAGAGCTTAGTGTCAGTTTGCTTAACATTCAGGTTGGTCTAATTCGTAAAGCATGGAAGCACCCATCGGCGGATAGgtttgtggtcaaaaacatttcacttttatggctctgttaaagatttcactgaacatctgctaatttgttgaaatacttttcttatgtattgacaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG