Sequence
atgc intronic sequence ATGC exonic sequenceAACCTTGTTTCATCAAGATGCTCGTTTATGGGCTCCGATCACAGATTCTAATGCTCGTGACATGGCAGTTGCTGCGAGGGAAAGTTCCAGAAAGCTTCAGgtaattgtgacttatgcatggctttctttcatgttcgtaacgtcaaaaaccattcttgctcggcatagagttacttaacttttttttacattttgctatag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G39800.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G39800.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA14G07120.1 (Glycine max), 5'ss of exon 4
AACCTTGTTTCATCAAGATGCTCGTTTATGGGCTCCGATCACAGATTCTAATGCTCGTGACATGGCAGTTGCTGCGAGGGAAAGTTCCAGAAAGCTTCAGgtaattgtgacttatgcatggctttctttcatgttcgtaacgtcaaaaac-cattcttgc----tcggcatagagttacttaacttttttttacattttgctatag
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AACTCTCTTCCATAAAGATGCACATGAGTGGGTCCAAGTAAAAGAGGTCGATGCTCGTGAGATGGCAGTTGCAGCCAGGGAATGTTCCAGAAGGCTCCAGgtatcttttctatcttcaca--tttacaaaatgtctgacagatcatagatatattactgagatgttagtgaagcaatcctaatatcttaattttactttgcag---
upper sequence: AT2G39800.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G41850.1 (Glycine max), 5'ss of exon 4
AACCTTGTTTCATCAAGATGCTCGTTTATGGGCTCCGATCACAGATTCTAATGCTCGTGACATGGCAGTTGCTGCGAGGGAAAGTTCCAGAAAGCTTCAGgtaattgtgacttatgcatggctttctttcatgttcgtaacgtcaaaaaccattcttgctcggcatagagttacttaacttt--tttttacattttgctatag--
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AACTCTCTTCCATAAAGATGCACATGAGTGGGTCCAAGTAAAAGAGGTTGATGCTCGTGAGATGGCAGTTGCAGCCAGGGAATGTTCCAGAAGGCTCCAGgtatcttttctatcttcaca--tttacaatatgtctgacaaatcatagata--tattactgagatgttagtgaagcaatcctaatatcttaattttactatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116452373|gb|EG494965.1|EG494965EST: ATGCTCGTGACATGGCAGTTGCTGCGAGGGAAAGTTCCAGAAAGCTTCAG GCCTTATCTTCGGAAGACAGGNNNNNNNTTCTGCTTGATATTGCCGATGCC
genomic: ATGCTCGTGACATGGCAGTTGCTGCGAGGGAAAGTTCCAGAAAGCTTCAGgtaattgtga ... tttgctatagGCCTTATCTTCGGAAGACAGGAAAAAAATTCTGCTTGATATTGCCGATGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACCTTGTTTCATCAAGATGCTCGTTTATGGGCTCCGATCACAGATTCTAATGCTCGTGACATGGCAGTTGCTGCGAGGGAAAGTTCCAGAAAGCTTCAGgtaattgtgacttatgcatggctttctttcatgttcgtaacgtcaaaaaccattcttgctcggcatagagttacttaacttttttttacattttgctatag
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