Sequence
atgc intronic sequence ATGC exonic sequenceTTGAAATCGGACAACGAATGATTACAATATCGACTGTAGGTGTTCCAAACACAATCAAGAAGCTTGCATCTCATAAGCTTCAGTCGACCTTAGCTGTCAGgtgcgtcatcactttctgattttattcatgtgttgttcaattacttaaatgatcttttatacaaatttctctcgagtacttttactttactcagctttct...
Basic information
species | Arabidopsis thaliana |
transcript | AT2G39670.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G39670.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G095663_T01 (Zea mays), 5'ss of exon 2
TTGAAATCGGACAACGAATGATTACAATATCGACTGTAGGTGTTCCAAACACAATCAAGAAGCTTGCATCTCATAAGCTTCAGTCGACCTTAGCTGTCAGgtgcgtcatcact--ttctgattttattcatgtgttgttcaattacttaaatgatcttttatacaaatttctctcgagtacttttactttactcagctttct
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TAAAAATTGGGCAAAGGATGATGACAATATCTACGGTTGGTGTTCCAAATACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttattacgaatttgaatatcacataccattagcactggcggtcagtcaccatgctatattgcaggc-ctcttatttttttgctt-atgaagatcctc
upper sequence: AT2G39670.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G168412_T01 (Zea mays), 5'ss of exon 6
TTGAAATCGGACAACGAATGATTACAATATCGACTGTAGGTGTTCCAAACACAATCAAGAAGCTTGCATCTCATAAGCTTCAGTCGACCTTAGCTGTCAGgtgcgtcatcact--ttctgattttattcatgtgttgttcaattacttaaatgatcttttatacaaatttctctcgagtacttttactttactcagctttct
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TAAAAATTGGGCAAAGGATGATGACAATATCTACAGTTGGTGTTCCAAATACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttattacgaatttgaatatcacataccattagcactggcggtcagtcaccatgctata-gtgcaggcctcttatttttttgcttgtgaagatcctc-
upper sequence: AT2G39670.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G395039_T01 (Zea mays), 5'ss of exon 5
TTGAAATCGGACAACGAATGATTACAATATCGACTGTAGGTGTTCCAAACACAATCAAGAAGCTTGCATCTCATAAGCTTCAGTCGACCTTAGCTGTCAGgtgcgtcatcact--ttctgattttattcatgtgttgttcaattacttaaatgatcttttatacaaatttctctcgagtacttttactttactcagctttct
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TAAAAATTGGACAAAGGATGATGACAATATCTACAGTTAGTGTTCCAAATACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttattacgaatttgaatatcacataccattagcactggcggtcagtcaccatgctatattgcaggcctcttattttttttgcttg--tgaagatcctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125186522|gb|EL201476.1|EL201476EST: GAAGCTTGCATCTCATAAGCTTCAGTCGACCTTAGCTGTCAG CTTACATGCGCCAAATCAGAGCCTCAG
genomic: GAAGCTTGCATCTCATAAGCTTCAGTCGACCTTAGCTGTCAGgtgcgtcatc ... ggtgaatcagCTTACATGCGCCAAATCAGAGCCTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGAAATCGGACAACGAATGATTACAATATCGACTGTAGGTGTTCCAAACACAATCAAGAAGCTTGCATCTCATAAGCTTCAGTCGACCTTAGCTGTCAGgtgcgtcatcactttctgattttattcatgtgttgttcaattacttaaatgatcttttatacaaatttctctcgagtacttttactttactcagctttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC